Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0494 ATGCAAGTGGCGGCAGAACTTCAACACACCCATCACCACCAAGACACTCCGATGTGCCGCCAAATCCAGCTCACCATAACCGATCACACAGTCTCGCACACCACTGCTGTTGCCGGGGAAGATGTCTCCGACAAGCTTGACGGGGAGGATCTCTTCGTTCCGCCTCTCAACTTCGCCATGGTTGATAATGGCATTTTCCGCTCTGGCTTCCCAGAACCTGCTAACTTCTCCTTCCTCCAAACCCTTGGCCTCCGCTCCATCATATATTTGTGTCCCGAACCGTATCCGGAGGCCAACATGGAGTTCCTCAAGTCAAATGGGATCAAGCTTTATCATTTTGGGATCGAGGGTCATAAGGAACCTTTTGTGAACATCCCAGAGGACACAATCCGTGAAGCGCTGAAAGTTGTCCTTGATGTCAGGAATCACCCAGTTATAATTCACTGTAAGAGGGGAAAGCACCGAACGGGTTGTTTGGTAGGATGCTATAGAAAGTTGCAGAAGTGGTGCTTGTCATCTGTGTTTGATGAGTATCAGCGCTTTGCAGCTGCGAAAGCAAGAGTTTCAGATCAGAGTTTGGAGTGA 585 0.4974 MQVAAELQHTHHHQDTPMCRQIQLTITDHTVSHTTAVAGEDVSDKLDGEDLFVPPLNFAMVDNGIFRSGFPEPANFSFLQTLGLRSIIYLCPEPYPEANMEFLKSNGIKLYHFGIEGHKEPFVNIPEDTIREALKVVLDVRNHPVIIHCKRGKHRTGCLVGCYRKLQKWCLSSVFDEYQRFAAAKARVSDQSLE* 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0494 194 ProSiteProfiles Dual specificity protein phosphatase domain profile. 57 194 IPR020422 GO:0006470|GO:0008138
Vra6g0494 194 PANTHER TYROSINE-PROTEIN PHOSPHATASE 13 192 - -
Vra6g0494 194 PANTHER TYROSINE-PROTEIN PHOSPHATASE DSP1 13 192 - -
Vra6g0494 194 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 52 191 IPR029021 -
Vra6g0494 194 CDD PFA-DSP_Siw14 51 191 - -
Vra6g0494 194 Pfam Tyrosine phosphatase family 53 192 IPR004861 -
Vra6g0494 194 ProSitePatterns Tyrosine specific protein phosphatases active site. 147 157 IPR016130 GO:0016311|GO:0016791
Vra6g0494 194 Gene3D Protein tyrosine phosphatase superfamily 51 193 IPR029021 -
Vra6g0494 194 PRINTS Plant and fungal dual specificity phosphatase signature 52 69 IPR020428 GO:0016791
Vra6g0494 194 PRINTS Plant and fungal dual specificity phosphatase signature 89 102 IPR020428 GO:0016791
Vra6g0494 194 PRINTS Plant and fungal dual specificity phosphatase signature 108 122 IPR020428 GO:0016791
Vra6g0494 194 PRINTS Plant and fungal dual specificity phosphatase signature 125 139 IPR020428 GO:0016791
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0494 Vra-Chr6 4167242 4172800 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0494 24 191 Protein tyrosine phosphatase (PTP) family AT4G03960 69.048 1.40e-87 254
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0494 K18045 - gmx:100814279 347.051
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0494 6 4167242 4172800 Vra6g0494 6 4167242 4172800 ECH