Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0486 ATGTTACGTGGAGAATCTTCCTCAAGTTCTTCTGATGCATCTTCGCGGGGGAGCTACCATGTTTATTTGAGTTTTGGAATGGAAGGCACTCACGTAGATTTTGCTAACACCTTATGTCTTTCGTTGCAGCGGAAGGGAATCTCAACTTTCAGATATGATAAGCTAGTTGAGAGAGATGTGATGTTGAAAAAAGTTCAGAAGGCAATGGAGGAGTGCCTTGTTGCCATTGTCCTTCTCTCCGAGAATTACGCTGCTTCCACTTGGTGTTTGGATGAACTCCGAAAGATTCTTGATGTGGGAAAACCAGTTATTCCTGTGTTTTACGAAGTCGTTCCTTCCGATGTTCGGCACCAGAGAAATAGTTTCGCTAAGGCTTTCGAAGAACACGAAAGAAGATCAGAAGAAGACCAATTGAAGGTGCAACAATGGAGGAAATCCTTGCAAGAAGTTGCGGACTTTTCTGGCTGGGAGTCCAAGGATAGGAGAAGGGAAGAGCTCATTGAAGACATTATTAAATCGGTATGGACAAAAATACGTCTTAGATTGGCATCATACGAGGAGGAAAGGGTTGGAATTGATTCAAGAGTTGAGAAAATACGTTCACTTTTGAAACTGGAATTGAAAGATGTGGTTCACTTCACTGGAATATGGGGCATGGGTGGCATAGGAAAGACAACTCTAGCAAGAGTTGTATTTAAGAAAATATGTAGCCAATTTGATATTAGTTGCTTCCTTGAAAATGTGAGGGAGATTTCTGGGAAAACTCATGACATGCTTACCTTACAAATAACACTTCTCTCTCATATGGAAGTGAAGGAATTCACAATTCAAAATTTGGATGAAGGAAAGATCGTAATAGGAGGTATCTTACGCAACAACAAAGTCCTCCTGGTCCTTGATGATGTTGATGACGCAAGACAACTGGACAGTTTGGGTGTGAATGATCAAGGGAAGTTTGGCCCTGGGAGCAGGATTATAGTAACAACAAGAGACATGGAAGTACTAAAACCACTTGGAAATTTTGAAATTTGTAAAATTGATCTGTTAAATTCTGATGAATCCCTTCAACTTTTTTGTCAGAAAGCATTTAAAAGAGACAAACCATCAGAACAACTATTGCAGTTGTCAAAAGTTGCTGTTCAACAAGCTGGAGGCCTTCCTCTGGCCCTTGAGATGATGGGTTCATCCTTCTGTGGGAGAAACGAATCTCAGTGGAAAACACTTTTAGATATGAAAGAATACTCAAAGAAAGATATTGTGATGGAGAAACTTATAATAAGCTATCATGGGTTACCAGAAAGTTATCAGATTTTGTTTCTTGATATTGCATGTTTCTTCAACGGGTGGGTGAAAGAGCATGTGGAAGAAATTCTAACAATTTGTTGCCGTTGTCCAGCAAACGGAATTGATGTACTAATTGGTAAATCACTGGTAAGTTGTGATGGATCACGTTTATGGATGCATGATTTACTTCAAGAAATGGGAAGAAAAATTGTTGTCGAAAAATGTCTGGTAGATGCTAGCAAACGCAGCAGGTTGTGGTCACCCCATGACATTGATCAAGCACTAAAAAGAAAGAAGAAAAATGAATCGATTCAGGGTATAGTTTTGAAGTCGTCCACTGAGCCATACATTGCAAATTGGGATCCCGAAGCCTTCTCAAAGATGTACAATCTCAAATTCCTTATAATTAATTTTCACAATATACAATTTCCCCGTGGCCTCAAATGTCTTAGCAGTTCACTGGAAGTTCTTCAGTGGACAAAGTGTACTTTGGAAGCTCTGCCGCTTGGCGTTGAGCTTGAGAAACTTGTAGTGTTAAAAATGCGTTACAGCAAAATAAAGAAGATCTGGAGTGATTCTCAAGTAAGTATCTCAGTTAACATCTTGCGCATTCAATTTAGTACTAGCACAAAATCTTCCAAAGCTAATCATTTTCATACTTCCGTTCTAATCGGTCAGCATTTCAAAAGGTTGAAGTTCATTGATCTGAGCCATTCCGAAGATCTAATTGAAAGTCCTATAGTTTCTGAGGTTCCATGTCTTGAAATTTTGCTTCTTGAAGGTTGTAAAAACCTTGTCAAAGTTCACCAATCTGTTGGACTGCACAAGAAGCTTGTCGTGTTGAACTTGAAAGATTGCATAAACCTTCAAATCCTACCAACAGAGTTTAAAATGGATTCTTTGGAGGAATTGATTCTTTCTGGCTGCTCAAAACTTAAAAAGCTCCCCGAGTTTGACCTACTTACTGGATTAGAAATCTTCATGCCTTCTAATCATTTTGGTTTAAACTTTGAACATAAATTGAACTATTTTTGTCCGAGGGTGCATGCCAAGGCTTCAATGTTAAGTGGAGAATCTTCCTCAAACTCTTCGAGATGGACATACCATGTTTTTTTGAGTTTTCGAGGAGAAGACACGCGCTTAGGTTTTACAGATCACTTGTACGCTGCGTTGGTGAGAAAGGGAATCATAACTTTCCGAGATGACAAAAATCTAGAGAAAGGAGATAAGATAGATAAAGAACTATTTAAAGCAATTGAAGAGTCCCTCGGGGCCATTGTGATTCTCTCTGAGAACTATGCCTCTTCCTCTTGGTGTTTGGATGAGCTCAACAAAATTCTGGAATCAAATAGAGCTCTGGGGAGAAAAGTTTTCCCAGTTTTCTGTGGGGTTAGTCCTAGTGAGGTTCAACACCAGACAACAAAGAGTTTTGAAGAGGCTTTTCAGAAACATGAAAGAAGATTTGAGAAAGACACAGAAAAGGTGCGACAATGGAGAGATTCCTTGAAGGAGGTTAGCCAAATTGCTGGCTGGGAGTCCAAAAATTACCAGCATCAAACGGAGCTCATTGAAAACATTGTTGAATCGGTATGGACAAAGCTACGTCCTGAAATGCCATCTTTCAATGATGGGTTAGTTGGAATTGGCTCAAGGGTTAAGAAAATGGACTCACTTTTAAGGATAGAATCCAAGGATGACGCTAGCTTTATCGGAATATGGGGCATGGGTGGCATTGGAAAGACAACCCTAGCGAGAGCTGTCTTCAGGAAAATCCAGCACCAGTTTGATATTAGCTGCTTCCTCGACAACATCAGAGAGATTTCAAAAGAAAGTGGTGGCAGGCTTCGTTTACAAGGAAAACTCCTTTCTCATCTGGGTATAAAAGGCTTGGAAATTAGAGATTTAGACGAGGGAAAGAACACAATAAGAGAACTTCTATTCAAGAAGAAAGTTCTTCTTGTCCTTGACGATGTTGATGATACTAGCCAACTAGAGAGTTTGGCTGAGAGGTTAGAGTGGTTTGGCCCCGGGAGCAGAGTTATAATAACAACAAGAGACACACACGTCCTAATATCACATGGAATAGTTGAAAACTACAAAATTGACGTCTTAAATTCTGACGAATCCCTTCAACTCTTGAGCCAGAAAGCCTTCAAAAGAGATAAACCTGATGAACATTATTTGGAGTTGTCAAAAGCTGTTGCCAAATATGCAGGAGGCCTCCCTTTGGCCTTGGAGCTGTTAGGTTCATTTCTGTGTGGAAGAAGTGAATCCCAATGGAAAGAAGTAGTGGATATGATAAAAGAAGTGCCCCCGAGTCATATTGCGATGAAATCGCTTAGAATAAGCTACAATGGGTTGCCACTACGTTATAAAACTTTGTTTCTTGATATTGCATGTTTCTTCAAAGGGAGGATAAAAGAGCTTGTGATACAAGCTCTAGAAATTTGTGAGCGTTATCCACCAGTTGGAATTGAACTTCTGGTTGAAAAATCACTAGCAACTTATGATGGCTTTACCATAGGGATGCATGATTTGCTTCAAGAATCAGCAAGGGAAATTGTTAAAGAAGAAAGTTATGTGGATCCGGCCAAACGAAGTAGGTTGTGGACTCTAGAGGAGACAAATGAAGTATTAAAACACAATAAGGCAAATGAATCAATTGAAGGTATTGTTTTGAACTCGCCTGAAAAGGAAGAAGCTATTTGGGATCCTGAAGCGTTCTCAAGGATGTATAATCTTCAATTACTTATCATAAACTATCGTTTAAATCTTCCTACTAGCCTCAAATCTCTTTGCAGTTCTCTGAAATTTCTTCAGTGGATGAACTATCCTTTGGAATCTCTGCCGCTTGGCGTGCTGCTGGATGAACTTGTAGAGTTGAAAATGCATTCCAGCAGAATAAAAAAGATTTGGAATGGAAATCAAGATTTTGCAAAGCTGAAGTTCATTGATTTGAGCTATTCTGAAGATCTAATTGAAACCCCGATAGTTTCTGGGGCTCCGTCTCTTGAAAGATTGCTTCTTATAGGTTGTATAAACCTTGTTGAGGTTCACCCATCAGTTGGACAACACAAGAGACTTGTTCTATTGTTGCTGAAAGATTGCAAGAATCTTCAAATCATGCCAAGAAAATTGGAACTGGATTCTTTGGAGGAATTGATTCTCTCTGGCTGCTCAAAAATTGAAAAACTCCCTGAATTTGGAGAGAACATGAAATCTTTATCACTGCTTAATGTGGAGAATTGCATAAATCTCCTTTCCCTGCCAGATTCCATTTGCAATTTGAGATCTCTCAGAAAACTCTACGTTTCTGGCTGCTCAAGAATCTCAACACTGCCAGATGGTATGAATGAAAATGAGTCATTGGAGGAGGTTCATGTGAGTGGTACTGATATAAGAGAAATTCCTTTATGTTTAGAAAAACTTAGAGAGCTCTCCTTTGGAGGAAGGAAAGAAACAACACCCAAATCACAAAACTTACTTCAATGGATCTCGAAGTTTATGGGGCAACTAGATATGCAGGAGTCCATGGTGCCTCCTCTTTCCAGTTTATTGGCCTTGGAGTCCTTGGATTTAAGTTATCGAGGTCTTACTGATGAATCAATTCCTAGTGATCTTGGTCCTTTCTCATTGTTGAAGCGTTTAGATCTAAGTGGTAACAATTTTGTTAACCCACCTGCTCAATGCATTATTAGTCTTTCTATGTTGCATACTTTGTCCTTCAATGATTGCCCAAGACTTGAATCCTTGCCATTGCTTCCACCAAATTTACAAGCTTTGTACGCAACTAATTGTCCTAACTTGGAACCCTTTCACTTGGTTGGAGATACTCTATGGAAGATCTTTGAGTCACATTCACATGAGGATCCGATTGAAGGGCCAGAGCTTTGGTTCATAATACCAGGGAATGAAATTCCATCTTGGTTCAACAATCAAAACTCTCTTGCAATTGATTCATCAGATGAAACGTATGAGAAGTTGTGTTGTGATTCAGTAACTTCAATAACAGTGGATGTACCTGAGGACTTCCAGTTAAGTGAATGGTGGGGTATTGCAGTATGCCTAGTATTAGAACCTTTGAACATGGATGTGCCATCTTCATGTAATGCAAGGTCAACTTCTACTGTCAATGAGGAAATTGGCATTTATTACTGGGTGTGTAAAGCTCCTGATAAAGATCCTGACCCAAATTTTCCTATAGCACCCAAGTTTGGGCACATGCTGTATAAATTCAAGGAGCCTTACATCCATATTATATTCTTGAATGCTGATCATGTGTATATTCAGCATTATCTAAGTGGGGAGCAAACACAGCTTGAAGTGATACTTTTTGTTGAAAATTTTTCTGAATCATGCAAGGCAAGAATAAAGAAGTGTGGTTGCCGTGTGATATGTAAGGAAAAAATTGAAGAATGGAGGAAGCACTCAGATGATCTTAATATATCAAGAATAACAGAAACGAATCAAGATGAGGAACGTCATGAATTGGAGGAGGAAGAACCTACTTCTCCAAACACATCCTCTCCCGTGGAGAAAACAGAAGGACAAACTACCCTTGGTAAATGA 5853 0.394 MLRGESSSSSSDASSRGSYHVYLSFGMEGTHVDFANTLCLSLQRKGISTFRYDKLVERDVMLKKVQKAMEECLVAIVLLSENYAASTWCLDELRKILDVGKPVIPVFYEVVPSDVRHQRNSFAKAFEEHERRSEEDQLKVQQWRKSLQEVADFSGWESKDRRREELIEDIIKSVWTKIRLRLASYEEERVGIDSRVEKIRSLLKLELKDVVHFTGIWGMGGIGKTTLARVVFKKICSQFDISCFLENVREISGKTHDMLTLQITLLSHMEVKEFTIQNLDEGKIVIGGILRNNKVLLVLDDVDDARQLDSLGVNDQGKFGPGSRIIVTTRDMEVLKPLGNFEICKIDLLNSDESLQLFCQKAFKRDKPSEQLLQLSKVAVQQAGGLPLALEMMGSSFCGRNESQWKTLLDMKEYSKKDIVMEKLIISYHGLPESYQILFLDIACFFNGWVKEHVEEILTICCRCPANGIDVLIGKSLVSCDGSRLWMHDLLQEMGRKIVVEKCLVDASKRSRLWSPHDIDQALKRKKKNESIQGIVLKSSTEPYIANWDPEAFSKMYNLKFLIINFHNIQFPRGLKCLSSSLEVLQWTKCTLEALPLGVELEKLVVLKMRYSKIKKIWSDSQVSISVNILRIQFSTSTKSSKANHFHTSVLIGQHFKRLKFIDLSHSEDLIESPIVSEVPCLEILLLEGCKNLVKVHQSVGLHKKLVVLNLKDCINLQILPTEFKMDSLEELILSGCSKLKKLPEFDLLTGLEIFMPSNHFGLNFEHKLNYFCPRVHAKASMLSGESSSNSSRWTYHVFLSFRGEDTRLGFTDHLYAALVRKGIITFRDDKNLEKGDKIDKELFKAIEESLGAIVILSENYASSSWCLDELNKILESNRALGRKVFPVFCGVSPSEVQHQTTKSFEEAFQKHERRFEKDTEKVRQWRDSLKEVSQIAGWESKNYQHQTELIENIVESVWTKLRPEMPSFNDGLVGIGSRVKKMDSLLRIESKDDASFIGIWGMGGIGKTTLARAVFRKIQHQFDISCFLDNIREISKESGGRLRLQGKLLSHLGIKGLEIRDLDEGKNTIRELLFKKKVLLVLDDVDDTSQLESLAERLEWFGPGSRVIITTRDTHVLISHGIVENYKIDVLNSDESLQLLSQKAFKRDKPDEHYLELSKAVAKYAGGLPLALELLGSFLCGRSESQWKEVVDMIKEVPPSHIAMKSLRISYNGLPLRYKTLFLDIACFFKGRIKELVIQALEICERYPPVGIELLVEKSLATYDGFTIGMHDLLQESAREIVKEESYVDPAKRSRLWTLEETNEVLKHNKANESIEGIVLNSPEKEEAIWDPEAFSRMYNLQLLIINYRLNLPTSLKSLCSSLKFLQWMNYPLESLPLGVLLDELVELKMHSSRIKKIWNGNQDFAKLKFIDLSYSEDLIETPIVSGAPSLERLLLIGCINLVEVHPSVGQHKRLVLLLLKDCKNLQIMPRKLELDSLEELILSGCSKIEKLPEFGENMKSLSLLNVENCINLLSLPDSICNLRSLRKLYVSGCSRISTLPDGMNENESLEEVHVSGTDIREIPLCLEKLRELSFGGRKETTPKSQNLLQWISKFMGQLDMQESMVPPLSSLLALESLDLSYRGLTDESIPSDLGPFSLLKRLDLSGNNFVNPPAQCIISLSMLHTLSFNDCPRLESLPLLPPNLQALYATNCPNLEPFHLVGDTLWKIFESHSHEDPIEGPELWFIIPGNEIPSWFNNQNSLAIDSSDETYEKLCCDSVTSITVDVPEDFQLSEWWGIAVCLVLEPLNMDVPSSCNARSTSTVNEEIGIYYWVCKAPDKDPDPNFPIAPKFGHMLYKFKEPYIHIIFLNADHVYIQHYLSGEQTQLEVILFVENFSESCKARIKKCGCRVICKEKIEEWRKHSDDLNISRITETNQDEERHELEEEEPTSPNTSSPVEKTEGQTTLGK* 1951
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0486 1950 PRINTS Disease resistance protein signature 997 1012 - -
Vra6g0486 1950 PRINTS Disease resistance protein signature 1073 1087 - -
Vra6g0486 1950 PRINTS Disease resistance protein signature 1166 1180 - -
Vra6g0486 1950 PRINTS Disease resistance protein signature 1474 1490 - -
Vra6g0486 1950 SMART AAA_5 994 1130 IPR003593 -
Vra6g0486 1950 SMART AAA_5 210 352 IPR003593 -
Vra6g0486 1950 Pfam NB-ARC domain 990 1198 IPR002182 GO:0043531
Vra6g0486 1950 Pfam NB-ARC domain 196 410 IPR002182 GO:0043531
Vra6g0486 1950 Gene3D - 16 179 IPR035897 -
Vra6g0486 1950 SMART till_3 795 936 IPR000157 GO:0007165
Vra6g0486 1950 SMART till_3 18 153 IPR000157 GO:0007165
Vra6g0486 1950 ProSiteProfiles TIR domain profile. 794 962 IPR000157 GO:0007165
Vra6g0486 1950 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 963 1226 IPR027417 -
Vra6g0486 1950 Pfam TIR domain 796 970 IPR000157 GO:0007165
Vra6g0486 1950 Pfam TIR domain 19 178 IPR000157 GO:0007165
Vra6g0486 1950 SUPERFAMILY L domain-like 545 759 - -
Vra6g0486 1950 Gene3D Ribonuclease Inhibitor 1330 1473 IPR032675 -
Vra6g0486 1950 Gene3D Ribonuclease Inhibitor 543 756 IPR032675 -
Vra6g0486 1950 Gene3D Ribonuclease Inhibitor 1474 1548 IPR032675 -
Vra6g0486 1950 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 181 442 IPR027417 -
Vra6g0486 1950 MobiDBLite consensus disorder prediction 1931 1950 - -
Vra6g0486 1950 SUPERFAMILY Toll/Interleukin receptor TIR domain 787 939 IPR035897 -
Vra6g0486 1950 SUPERFAMILY L domain-like 1271 1711 - -
Vra6g0486 1950 Pfam Leucine Rich Repeat 603 622 IPR011713 -
Vra6g0486 1950 Gene3D Ribonuclease Inhibitor 1549 1721 IPR032675 -
Vra6g0486 1950 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 792 1505 - -
Vra6g0486 1950 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 15 625 - -
Vra6g0486 1950 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 1502 1758 - -
Vra6g0486 1950 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 660 743 - -
Vra6g0486 1950 Gene3D - 789 963 IPR035897 -
Vra6g0486 1950 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 15 625 IPR044974 GO:0006952
Vra6g0486 1950 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 792 1505 IPR044974 GO:0006952
Vra6g0486 1950 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 660 743 IPR044974 GO:0006952
Vra6g0486 1950 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 1502 1758 IPR044974 GO:0006952
Vra6g0486 1950 SUPERFAMILY Toll/Interleukin receptor TIR domain 8 156 IPR035897 -
Vra6g0486 1950 Gene3D - 180 340 IPR027417 -
Vra6g0486 1950 Gene3D - 964 1123 IPR027417 -
Vra6g0486 1950 ProSiteProfiles TIR domain profile. 17 178 IPR000157 GO:0007165
Vra6g0486 1950 MobiDBLite consensus disorder prediction 1910 1950 - -
Vra6g0486 1950 Gene3D - 1131 1216 IPR042197 -
Vra6g0486 1950 Gene3D - 348 432 IPR042197 -
Vra6g0486 1950 SUPERFAMILY "Winged helix" DNA-binding domain 424 524 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0486 Vra-Chr6 4063131 4071868 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0486 14 746 WRKY Transcription Factor Family AT4G12020 31.283 7.53e-72 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0486 - - vra:106763277 3780.72