Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0484 ATGACATTCTCCGTCTTCAAACTTCTTCTGTCATCATTCCTTCTCTGCACTTTCTTGCAGGAACCCACCAATGCCCTTAGAAAGACGTACATTGTGTACTTGGGAGGGCACTCTCATGGTCCAGACCCTTCTCCCACTGATCTTGAAACAGCAACAAATTCTCATCATCAGTTACTCGCTTCTGTCTTAGGAAGTCATGAGGATGCAAAGGAAGCAATTATGTACTCTTACAACAAGCATATCAATGGCTTCGCGGCCTTGCTTGAAGAGGAAGAAGCAGCAGAAATTGCAGAGTACCCAGAGGTAATTTCTGTTTTCTTGAGCAAAGAGCACAAACTGCACACTACCAGGTCGTGGGATTTTCTGGGACTGGAAAAGAATGGAAAAGTTCCTGCAAACTCTGCTTGGACCAAAGCAAGATATGGCGAAAACACAATCATAGCTAACATTGATACAGGAGTTTGGCCGGAACACCCGAGTTTTAACGACAGAGGATACGGGGCAGTGCCTTCAAAGTGGCGTGGGAAAGGTGTTTGTGAAATTGACAGTTTTAACACTACACAAAAATATTTCTGTAACAGGAAGCTGATTGGAGCAAGAGTATTCCTGAAGAATCGCGAGGCGGAAGGTGGGGAGATTGAGAGAACGTTCCGCAGCGCACGTGACTTCGTAGGGCATGGGAGCCACACTTTATCAACTGCAGGTGGTAATTTTGTTCCTGGTGCGAATGTAGAACGTAATGGCAGAGGCACTGCTAAGGGAGGGTCTCCAAAAGCTCGTGTTGTGGCCTACAAAGCATGTTGGAATACACTGGACACAGGAGGGTGCCACGAAGCAGATTTACTGGCAGCATTTGATCATGCAATTTATGATGGCGTTGATGTCATCTCCGCCTCTGTTGGTTGGTCTGATCCCTACAAGGAAGCTCTGCTAACCGATGGTGTTTCCATTGGATCATTCCATGCAGTTGCCAAAAATATTGTCGTTGTTTGCTCTGCTGGAAATGATGGCCCCTCACGTTCATCCGTCACAAACGTTGCACCTTGGTCTTTCACTGTTGCTGCCAGCACCATGGATAGGGATTTCCTCAGCACCATTTCTCTTGGCAAGAAAAAACACCTTCAGGGTGCCAGTCTTAATCGAGGCTTGCCACGACCCAAGCGAAAGTTCTATCCTGTTATATCTTCTGTCAACGCAAAACTTCGAAATGCTTCCGTTAATGATGCGCGTGTTTGCAAACCAGGAACACTTGATCCTGCCAAAGTAAGAGGGAAAATACTTATTTGCCTTCGAAGTGATAAATTACAATCTGTTAAAGAGGGCGAACAGGGTAAACTTGCTGGTGCTGTGGCAGTTTTTGTGCAGAATGATGAGCAAAGTGGAAATTTACTTCTGGCCGAAAATCAAGTTTTACCTGCTGCAAGTATAAGTGGAACGAATACTAATTATGGCAATGTTACAGGCGGCGGTGGCGGGATGTTTGCCTACTTGAGTGCTGCAAAAACATATCTAAATGTAAAGCCAGCTCCAATCATGGCTGGATTCTCATCTAGGGGTCCTAGTCTGGTGCAACCGTTGATACTAAAGCCTGACATAACTGGTCCGGGTGTGGGTATAATTGCTGCCTTTTCACAAGCCGCGGGTCCTTCTAATCTTGCATCAGATACACGAAGGACTCTTTTCAATGTGCAACAAGGAACCTCTATGGCCTGTCCTCATGTTGCTGGCATTGCGGGTCTTCTCAAAACGTACCATCCAACCTGGAGTCCCGCAGCTATCAAATCTGCTATTATGACTACAGCTACNACTCTAGATAACACGAATAAACCAATCCGGGATGCATTTGATAAGGTAGCAACTCCATTCGAGTACGGAGCTGGACTTGTTCGGCCTAACCTTGCAATAGACCCTGGACTCGTTTATGATCTAAACACAACTGATTACTTGAACTTCTTATGTGCTTCTGGTTACAATCAAGCTCTACTCACATTGTTTTCCAATTATAAAATCTCTTACAAATGTCCCGAGTCTTACAGAATCGAGGATCTGAATTATCCTTCTATTACAGTGCATCATCCTTCGTCAAAGCCTATAAATGTTACTCGCATTGTTACAAACGTTGGACCTCCAGGCACGTATGTTGTGAATGCTCATGGGCCCAAGGGGATAAAGGTTCGTGTCCTACCAACCTCCTTGACTTTTAAGAGAACTGGAGAAAAGAAGAGGTTTTGGGTTATTCTGCAGGCAATTGCAACGCCCAGAGGGTTACCTTTATTTGGGAATTTGATTTGGACAGATGGCAAACACAATGTAACCAGTCCTATTACAGTGTTGTAA 2337 0.4501 MTFSVFKLLLSSFLLCTFLQEPTNALRKTYIVYLGGHSHGPDPSPTDLETATNSHHQLLASVLGSHEDAKEAIMYSYNKHINGFAALLEEEEAAEIAEYPEVISVFLSKEHKLHTTRSWDFLGLEKNGKVPANSAWTKARYGENTIIANIDTGVWPEHPSFNDRGYGAVPSKWRGKGVCEIDSFNTTQKYFCNRKLIGARVFLKNREAEGGEIERTFRSARDFVGHGSHTLSTAGGNFVPGANVERNGRGTAKGGSPKARVVAYKACWNTLDTGGCHEADLLAAFDHAIYDGVDVISASVGWSDPYKEALLTDGVSIGSFHAVAKNIVVVCSAGNDGPSRSSVTNVAPWSFTVAASTMDRDFLSTISLGKKKHLQGASLNRGLPRPKRKFYPVISSVNAKLRNASVNDARVCKPGTLDPAKVRGKILICLRSDKLQSVKEGEQGKLAGAVAVFVQNDEQSGNLLLAENQVLPAASISGTNTNYGNVTGGGGGMFAYLSAAKTYLNVKPAPIMAGFSSRGPSLVQPLILKPDITGPGVGIIAAFSQAAGPSNLASDTRRTLFNVQQGTSMACPHVAGIAGLLKTYHPTWSPAAIKSAIMTTATTLDNTNKPIRDAFDKVATPFEYGAGLVRPNLAIDPGLVYDLNTTDYLNFLCASGYNQALLTLFSNYKISYKCPESYRIEDLNYPSITVHHPSSKPINVTRIVTNVGPPGTYVVNAHGPKGIKVRVLPTSLTFKRTGEKKRFWVILQAIATPRGLPLFGNLIWTDGKHNVTSPITVL* 779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0484 778 ProSitePatterns Serine proteases, subtilase family, serine active site. 566 576 IPR023828 -
Vra6g0484 778 Gene3D Peptidase S8/S53 domain 145 648 IPR036852 GO:0004252|GO:0006508
Vra6g0484 778 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 18 778 IPR045051 -
Vra6g0484 778 Pfam Fibronectin type-III domain 682 777 IPR041469 -
Vra6g0484 778 ProSiteProfiles Serine proteases, subtilase domain profile. 118 635 - -
Vra6g0484 778 Gene3D - 652 778 - -
Vra6g0484 778 CDD Peptidases_S8_3 111 602 IPR034197 -
Vra6g0484 778 PRINTS Subtilisin serine protease family (S8) signature 142 161 IPR015500 -
Vra6g0484 778 PRINTS Subtilisin serine protease family (S8) signature 222 235 IPR015500 -
Vra6g0484 778 PRINTS Subtilisin serine protease family (S8) signature 565 581 IPR015500 -
Vra6g0484 778 CDD PA_subtilisin_like 365 477 - -
Vra6g0484 778 PANTHER SUBTILISIN-LIKE SERINE PROTEASE 18 778 - -
Vra6g0484 778 SUPERFAMILY Subtilisin-like 113 639 IPR036852 GO:0004252|GO:0006508
Vra6g0484 778 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 17 114 IPR037045 -
Vra6g0484 778 Pfam Peptidase inhibitor I9 29 114 IPR010259 -
Vra6g0484 778 Gene3D - 359 504 - -
Vra6g0484 778 Pfam Subtilase family 142 606 IPR000209 GO:0006508|GO:0008236
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0484 Vra-Chr6 4029236 4033864 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0484 29 777 Subtilisin-like Serine Gene Family AT2G04160 52.261 0.0 764
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0484 - - gmx:100796255 1239.17