Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0481 ATGCCCAACATCTTTGTAGTATACCATATACCTCAATCGCCAAGTACCTCAAACATGGTCTTCACTGTTCTTTCAGTAGCTCTCTGTTCACTGTTAGGCCTCCATTTTTTTACCATTTTTTCTTTTGCTGCCACCATTGATGAAGCAGGTGCTTTACTTGAGTGGAAAGCTAGCCTTGAAAACCAAAGCCAAGCTTCTCTGTCTTCATGGACTGAAGGTGTGAATCATTGCAAGTGGAAAGAAATCATTTGTGGCAAATCCAACTCTATCACCTCTATAAATGTAGCAAATCATGGCCTAAAAGGTACTCTTCACACTCTCAACTTCTCATCTTTTCCAAACCTGCTAACTCTGGATGTTAGTAACAACAGTTTCAGTGATACTATTCCTCAACAAATTGCTAACCTGTCCAGAGTTTCTGAGTTGATAATGAATAAAAACAATTTTAGTGGTCCAATCCCCATTTCCATGACCAAGTTGGCTAACTTGAAGATTCTAAACTTGAAAGAAAATAGCATTTCTGGCCCTCTTCCTGAAGAGATTGCAGAATTGAGGAACTTAGAGCGTCTGTTATTTGAATCAAATCACCTTTCTGGTACCATTCCTCCAACAATTGGAAGGATGACCAACCTTGTGGAACTTAATCTGCAACTCAACTTAATCAATGGTACAATCCACCCTTCAATTAGAAACTTGACAAATTTAAAATTCCTCAGGCTCCAACAAAATATTCTCTCTGGCCCCATTCCACACTTCATAGGAGAGATGACCAGTTTGCATGCTCTTGAACTCGATCACAATAGAATTACAGGACCAATTCCTCCCAATATTGGAAACTTGACAAATATGGTCAATATGTCCTTGGCCGATAACATGCTTTCTGGACCAATTCCTCCCTCCCTGGGAAACTTGGTCAATCTAATGGCCTTAGAACTTTCCAGGAACAATCTTTCCGGAGTTGTTCCTCCCAGCATGGGAAATTTGACAAACCCCATCTATTTAGTTTTGCATACCAACAAACTTGAAGGCCGATTACCACCAGGAATGAATAACTTCACCAATTTAATAAGCTTACAAATAGCTGGAAATAGTTTCACTGGCCCTCTGCCCCAACAAATTTGCCTTGGTGGGTCACTAAACTATCTCAGTGCTGAAGGTAATCATTTCACGGGTCCAGTTCCAAAAAGCCTGAAAAATTGCTCCAGTCTTGTGAGACTCAGACTAGAAGGAAACCGGTTGAGTGGAAATATATCAGATGATTTTGGTGTTTATCCATTGTTGAATTACATTGGTCTGAGTGGGAATAATTTTTACGGCGACATTTCTCCAAATTGGGCAAAGTGTCCTAGTCTCTCAACCCTTATAATGTCCAACAGCAACTTAACCGGTAGTATACCACCTGAACTCAGCCGGGCATCCAATTTAGCAGAACTTAACTTGTCTTCAAATCATTTAACTGGGAGAATTCCAAAAGAACTCGGGAAGCTGACATCTTTATTGAAGCTATCAGTAAGCAACAATGAACTTTCTGGCCCCATTCCTACAGAAATTGGTAATTTGTCGAACCTTGACACTCTGGAGCTTTCGGCAAACAATTTAGATGGTGCAATTCCAAAACAGTTGGCAGAGCTATCCAGGTTGATTCGCTTGAACTTGAGCAACAACAGATTGACAGAAAGCATTCCCTTGGAATTGGGTGCTTTGCAATCTCTTGAAAGCCTTGATCTTAGTGTCAATTTGTTAAATGGAGAAATACCATCTTCACTTGCAAGTATGCAAAGTTTGGAAACGCTAAATCTCTCTCACAACAGTCTCTCTGGAGGCATTCCATCTAATTTTAAGGATGGCTTGGCAAAGATTGACATATCTGACAACCAATTGGAGGGTCCAATTCCTAACAGTCGGGCCTTTCGCAATGTTTCATTTGATGCATTGAAAGGTAATAAAGGCTTGTGTGGAAATGTCCACGGTTTGGTGCCTTGCAGCAGTAGTAATGGTAAAGTGAAAAGAAATGTCACCACGTTGGCATTAGTCCTTACTTTGGGTGCTCTACTTCTGGTAATACTCGTGGTTGTAGTTTTGTTTTGTATTCGCTACAGAAGAACAATAACAGAAGGCAAAAAGGAGGATGCTAAAGAAGAAGAAACTCAGGAACATTATGCCATATGGAGTTATGATGGGAAATTAGTGTATGAAAATATCATTGAAGCCACAGAGAATTTTGATGACAAATATCTTATTGGAGTAGGAGGGTCTGCATCTGTTTATAGGGCTAAATTACCCACAGGACAGACTGTTGCTGTGAAAAAGATTCATGCTGCACCCGATGAAGAAACACCGGATTTAAAAGCTTTTATGACTGAGGTTAAAGCCTTGGCAGAAATCAAGCATCGTAACATTGTGAAGTCACTTGGATATTGTTTACATCCACGTTTCTCCTTTTTGGTTTATGAGTTCCTAGAGGGTGGTAGCTTGGATAGAGTACTCATGGATGACGTACGTGCAACAACGTTTGATTGGAACATGAGGGTAAAGGTTGTTAAAGGTGTCGCAAATGCTTTGTATCATATGCATCATGGTTGCTTTCCTCCTATCATTCATCGAGACATATCAAGCAAGAATGTTCTTATAGATTCGGAATACGAAGCAAAAATTTCTGACTTTGGAACAGCTAAAATTCTGAATCCTGATTCACGCAATTTAACAGCTTTTGCAGGCACATATGGGTATGCTGCACCAGAGCTTGCTTATACAATGGAAGTGAATGAAAAATGTGATGTGTTCAGTTTTGGGGTGCTTTGCTTTGAAATAATGATGGGAAAGCACCCAGGAGATCTCATTCCATCGTTTTTTCCATCTTCTGAAACAACATCAGCGTATAATTTACTGTTGAAGGATATGTTGGACCAAAGACTACCCCTTCCAGAGAATCCAGTTGATGAGGAGGTGATTTTGATTGCCAAAGTAACATTTGCTTGCTTAAGTGAAACTCCAGGTCTTCGTCCAAGCATGGAACAAGTGTATAACGATTTTGTGATGCCAAAATCATCTTCACTCAATTCACTCTCCATCGTCACACTTGCTCAACTTGTCAATAACTGA 3102 0.401 MPNIFVVYHIPQSPSTSNMVFTVLSVALCSLLGLHFFTIFSFAATIDEAGALLEWKASLENQSQASLSSWTEGVNHCKWKEIICGKSNSITSINVANHGLKGTLHTLNFSSFPNLLTLDVSNNSFSDTIPQQIANLSRVSELIMNKNNFSGPIPISMTKLANLKILNLKENSISGPLPEEIAELRNLERLLFESNHLSGTIPPTIGRMTNLVELNLQLNLINGTIHPSIRNLTNLKFLRLQQNILSGPIPHFIGEMTSLHALELDHNRITGPIPPNIGNLTNMVNMSLADNMLSGPIPPSLGNLVNLMALELSRNNLSGVVPPSMGNLTNPIYLVLHTNKLEGRLPPGMNNFTNLISLQIAGNSFTGPLPQQICLGGSLNYLSAEGNHFTGPVPKSLKNCSSLVRLRLEGNRLSGNISDDFGVYPLLNYIGLSGNNFYGDISPNWAKCPSLSTLIMSNSNLTGSIPPELSRASNLAELNLSSNHLTGRIPKELGKLTSLLKLSVSNNELSGPIPTEIGNLSNLDTLELSANNLDGAIPKQLAELSRLIRLNLSNNRLTESIPLELGALQSLESLDLSVNLLNGEIPSSLASMQSLETLNLSHNSLSGGIPSNFKDGLAKIDISDNQLEGPIPNSRAFRNVSFDALKGNKGLCGNVHGLVPCSSSNGKVKRNVTTLALVLTLGALLLVILVVVVLFCIRYRRTITEGKKEDAKEEETQEHYAIWSYDGKLVYENIIEATENFDDKYLIGVGGSASVYRAKLPTGQTVAVKKIHAAPDEETPDLKAFMTEVKALAEIKHRNIVKSLGYCLHPRFSFLVYEFLEGGSLDRVLMDDVRATTFDWNMRVKVVKGVANALYHMHHGCFPPIIHRDISSKNVLIDSEYEAKISDFGTAKILNPDSRNLTAFAGTYGYAAPELAYTMEVNEKCDVFSFGVLCFEIMMGKHPGDLIPSFFPSSETTSAYNLLLKDMLDQRLPLPENPVDEEVILIAKVTFACLSETPGLRPSMEQVYNDFVMPKSSSLNSLSIVTLAQLVNN* 1034
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0481 1033 Gene3D Transferase(Phosphotransferase) domain 1 820 1022 - -
Vra6g0481 1033 ProSitePatterns Protein kinases ATP-binding region signature. 747 770 IPR017441 GO:0005524
Vra6g0481 1033 Pfam Leucine Rich Repeat 594 614 IPR001611 GO:0005515
Vra6g0481 1033 Pfam Leucine rich repeat 521 581 IPR001611 GO:0005515
Vra6g0481 1033 Gene3D Phosphorylase Kinase; domain 1 701 819 - -
Vra6g0481 1033 Gene3D Ribonuclease Inhibitor 333 665 IPR032675 -
Vra6g0481 1033 Pfam Leucine rich repeat N-terminal domain 47 84 IPR013210 -
Vra6g0481 1033 SMART LRR_typ_2 496 520 IPR003591 -
Vra6g0481 1033 SMART LRR_typ_2 256 280 IPR003591 -
Vra6g0481 1033 SMART LRR_typ_2 112 136 IPR003591 -
Vra6g0481 1033 SMART LRR_typ_2 184 208 IPR003591 -
Vra6g0481 1033 SMART LRR_typ_2 304 328 IPR003591 -
Vra6g0481 1033 SMART LRR_typ_2 544 568 IPR003591 -
Vra6g0481 1033 SMART LRR_typ_2 592 615 IPR003591 -
Vra6g0481 1033 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 23 1031 - -
Vra6g0481 1033 SUPERFAMILY L domain-like 67 414 - -
Vra6g0481 1033 ProSiteProfiles Protein kinase domain profile. 741 1012 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g0481 1033 SUPERFAMILY RNI-like 310 629 - -
Vra6g0481 1033 SUPERFAMILY Protein kinase-like (PK-like) 723 1011 IPR011009 -
Vra6g0481 1033 PRINTS Leucine-rich repeat signature 307 320 - -
Vra6g0481 1033 PRINTS Leucine-rich repeat signature 592 605 - -
Vra6g0481 1033 Pfam Protein kinase domain 743 1009 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g0481 1033 ProSitePatterns Tyrosine protein kinases specific active-site signature. 865 877 IPR008266 GO:0004672|GO:0006468
Vra6g0481 1033 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 23 1031 - -
Vra6g0481 1033 Gene3D Ribonuclease Inhibitor 46 325 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0481 Vra-Chr6 4000084 4003495 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0481 40 913 Receptor kinase-like Gene Family AT4G08850 45.126 0.0 741
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vra6g0481 Pkinase 2.3e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0481 - - vra:106762950 2005.33