Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0479 ATGATGTTCACAAAGCTTGTAACATTTCAGTATATTCTCACCACCTTTTTCTTTTCACTTTTAAGGGTCTATTCCTTGGAAGTTTCTGGTGTATCTTTATCCAACGTTAATGTTATGTTTGGCTATGATGCTGTCGAAGATGAAAACATTGAAGCAAGTGCTCTATTGAAGTGGAAAGCCAGCCTTGATAACCAAAGCCAGGTTTCCTTGTCTTCTTGGTCTACTTTCACTACCCCTTGCAAGTGGAAGGGAATAGTTTGTGATGAATCCAACTCTGTCAGCACTATAAATCTTGAAAACTTTGGACTACAAGGTACACTTCTCAATCTAAACTTGTCATCCTTTCCTAAGCTTCTGAGGTTGTATGTAAGTTACAACAACCTCAGTGGACCTATTCCTTCTCAAATTGGTAACATGTCCAAAATTTCTGTGTTGAAAATGAAACATAATTATTTTAGTGGTTCCATCCCCCTGACAATTGGAATGTTGACAAATCTTGTTACACTTGATTTATCATCCAACCTTCTCTCTGGTACAATCCCTTCACTTAGAAACTTAACAAATTTAGAGCAACTTATCCTCTTCAGCAACCTTCTCTCTGGTCCTATTCCTGAGGATTTGGGAGGACTTCATCATCTCAGAACAATCAAATTGTTAGATAATCATATTTCTGGGCCAATCCCTTCTTCCATAGGAGACCTGGCTAATTTGACGAAACTTCAGCTCACTCGAAATAAACTAAACGGGTCAATTCCTTCCTCTCTTGGAAACTTGACAAAACTCATTGAATTGTCCATATCTGAAAACAAGCTTTCTGGATCAATTCCTGCTTCCATAGGAAACTTGGTCTATCTAAAAAGGCTTAACCTTGCACAAAACAAACTTTCTGGACATATTCCCTCTACCTTCAGAAATTTGACTAAGCTTACCTTTCTATTACTTCATGTGAACAAACTTACCGGAAGTTTCTCAATAGCAACAAGTAACCTGACCAATTTAGTAAATTTACAACTAAGCTCTAATCATTTCACTGGTCCTTTGCCACAATATATTTGCCTTGGAGGGTCACTTCGATATTTTGCAGCCAATGACAATCGTTTTACTGGGCCAATTCCATCAAGTTTGAAGAACTGCTCCAGTCTTATGAGGCTCAACCTTGCAAAAAATATGTTGATGGGAAATATTCCAAATGATTTTGGTGTGTATCCAAATTTGAAATACATTGATCTGAGTAGAAATGCCTTCAACGGCCACCTTTCATCAAATTGGGTCAAATGTCATAATCTCATAGGCCTAATTATCTCATACAACAGATTATTCGGTGGTATACCCCCAGAGTTAGGCCAGGCACCTAAATTACAAATGCTTGAACTTTCTTCAAATCGTCTAACAGGAAAGATTCCAAAAGAACTTGGGAACTTGACCCAATTGTTTCAACTCTCCATAAGTAAGAACAATCTTTCAGGCAACATTCCCATTGAAATTGGTTCCTTAAACCAACTTCAGCTCTTTGATCTTGCAACAAATAATTTAAGCGGTCCAATCCCAAAACAGCTCGGCAGGTTGCTCAAGTTAAATCACTTGAACTTAAGCCATAACAATTTCACGGAAAGCATTCCATCTGAACTTAGCCAATTGCAACATCTTCGAGAACTTGATCTTAGTGGGAATTCTTTGAATGGAAAAATTCCAGCAACACTTGGAAAATTGAAGATGTTGGAATACTTTAACCTCTCCCACAACAATCTCAGTGGAAACATTTCTGCCAGTTTTAAGAATATGTTCAGTTTGACAAATGTTGACATATCTAACAATCAATTAGAGGGTCCAATTCCTAACAATCGAGCCTTTCTTAATGCTCCATTTCAAGCACTGCAAAACAACAAAAACTTGTGTGGCCATGCTTCTGGGCTGATGCCTTGCCCGCAGTTGTTGAGTCACAATCCTAATAATATCAAGAGCATGATGTTTTTACTTTTCCTTGCTTTGGGTGCACTATTTGTGGTTGGAGTTTCACTATATATTCATTGGCAAAAAGCAAGAAAAAAGAAAAAGCAAGAGAAAGAAGAACAAAATCGAGATCTTTTTTCTATATTGCATTATGATGGGAAAATAGTGCATGAAACCATCATCGAAGCAACAAATAATTTCGATGAAAAACATCTCATCGGAAAAGGAGGGTTTGGAGGTGTTTACAAGGCCATCTTACCCTCTGGCCAGATTGTTGCTGTGAAGAAACTTCAGGTTGAAGTTGACAGGGAAATGGTTGATTTTAAGGCTTTTACATCTGAAGTTCGAACCTTGACAGAAATCAAACATCGTAACATTGTGAAGTTGCATGGGTTTTGTGAACACCCACGCTATTGTTTCTTGGTTTACGAGTTCGTAGAAGGTGGCAGCTTGGATAAAGTACTAAACAGCGAAACACATGCAGCAATGTTTGATTGGAATAAGAGGGCTAACGTTGTTAAAGGAGTGGCAAATGCTTTGTATCATATGCACCATGGTTGCTCTCCTCCTATTGTTCATCGTGACATATCAAGCAAGAATGTTCTTATAGATTTGGAGTATGAAGCTCGCTTATCTGACTTTGGAACAGCAAAGATTCTAAACCCTAATTCACGTAATTTAACTTCGTTTGCAGGCACTTATGGATATGCTGCACCAGAGCTTGCTTATACAATGGAAGTGAATGAGAAATGTGATGTGTTCAGTTTTGGGGTGCTTTGTTTGGAAATAATAATGGGAAATCACCCAGGAGATCTGATTTCCTCGATGCATTCACCATCTTCAACATCAGTAACAGCTAATTTGCTATTGAAGGATGTGATGGACCAACGACTACCTCTTCCAGTGATGCCAGTTGTTAAGGAGGTGGTCATCATTGCAAAAGTGGCATTTGCTTGTTTGAATGAAAGACCACTTTCTCGTCCAACCATGGAAGATGTTTATAACAAGTTTGTGATGCCTAAGTCACCTTTAACGAGGGAGACACTCAACACCATTCTACTTGGACAACTTCAGAATGATTGA 3033 0.3838 MMFTKLVTFQYILTTFFFSLLRVYSLEVSGVSLSNVNVMFGYDAVEDENIEASALLKWKASLDNQSQVSLSSWSTFTTPCKWKGIVCDESNSVSTINLENFGLQGTLLNLNLSSFPKLLRLYVSYNNLSGPIPSQIGNMSKISVLKMKHNYFSGSIPLTIGMLTNLVTLDLSSNLLSGTIPSLRNLTNLEQLILFSNLLSGPIPEDLGGLHHLRTIKLLDNHISGPIPSSIGDLANLTKLQLTRNKLNGSIPSSLGNLTKLIELSISENKLSGSIPASIGNLVYLKRLNLAQNKLSGHIPSTFRNLTKLTFLLLHVNKLTGSFSIATSNLTNLVNLQLSSNHFTGPLPQYICLGGSLRYFAANDNRFTGPIPSSLKNCSSLMRLNLAKNMLMGNIPNDFGVYPNLKYIDLSRNAFNGHLSSNWVKCHNLIGLIISYNRLFGGIPPELGQAPKLQMLELSSNRLTGKIPKELGNLTQLFQLSISKNNLSGNIPIEIGSLNQLQLFDLATNNLSGPIPKQLGRLLKLNHLNLSHNNFTESIPSELSQLQHLRELDLSGNSLNGKIPATLGKLKMLEYFNLSHNNLSGNISASFKNMFSLTNVDISNNQLEGPIPNNRAFLNAPFQALQNNKNLCGHASGLMPCPQLLSHNPNNIKSMMFLLFLALGALFVVGVSLYIHWQKARKKKKQEKEEQNRDLFSILHYDGKIVHETIIEATNNFDEKHLIGKGGFGGVYKAILPSGQIVAVKKLQVEVDREMVDFKAFTSEVRTLTEIKHRNIVKLHGFCEHPRYCFLVYEFVEGGSLDKVLNSETHAAMFDWNKRANVVKGVANALYHMHHGCSPPIVHRDISSKNVLIDLEYEARLSDFGTAKILNPNSRNLTSFAGTYGYAAPELAYTMEVNEKCDVFSFGVLCLEIIMGNHPGDLISSMHSPSSTSVTANLLLKDVMDQRLPLPVMPVVKEVVIIAKVAFACLNERPLSRPTMEDVYNKFVMPKSPLTRETLNTILLGQLQND* 1011
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0479 1010 Gene3D Ribonuclease Inhibitor 48 206 IPR032675 -
Vra6g0479 1010 SUPERFAMILY L domain-like 328 656 - -
Vra6g0479 1010 ProSiteProfiles Leucine-rich repeat profile. 165 187 IPR001611 GO:0005515
Vra6g0479 1010 ProSitePatterns Tyrosine protein kinases specific active-site signature. 841 853 IPR008266 GO:0004672|GO:0006468
Vra6g0479 1010 ProSiteProfiles Leucine-rich repeat profile. 524 546 IPR001611 GO:0005515
Vra6g0479 1010 PRINTS Leucine-rich repeat signature 166 179 - -
Vra6g0479 1010 PRINTS Leucine-rich repeat signature 546 559 - -
Vra6g0479 1010 Pfam Leucine rich repeat 432 487 IPR001611 GO:0005515
Vra6g0479 1010 Pfam Leucine rich repeat 500 559 IPR001611 GO:0005515
Vra6g0479 1010 Pfam Leucine rich repeat 236 295 IPR001611 GO:0005515
Vra6g0479 1010 Gene3D Transferase(Phosphotransferase) domain 1 796 997 - -
Vra6g0479 1010 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 9 182 - -
Vra6g0479 1010 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 187 1008 - -
Vra6g0479 1010 SMART LRR_typ_2 522 545 IPR003591 -
Vra6g0479 1010 SMART LRR_typ_2 546 570 IPR003591 -
Vra6g0479 1010 SMART LRR_typ_2 115 139 IPR003591 -
Vra6g0479 1010 SMART LRR_typ_2 186 210 IPR003591 -
Vra6g0479 1010 SMART LRR_typ_2 330 354 IPR003591 -
Vra6g0479 1010 SMART LRR_typ_2 163 185 IPR003591 -
Vra6g0479 1010 SMART LRR_typ_2 234 258 IPR003591 -
Vra6g0479 1010 SMART LRR_typ_2 282 305 IPR003591 -
Vra6g0479 1010 ProSitePatterns Protein kinases ATP-binding region signature. 723 746 IPR017441 GO:0005524
Vra6g0479 1010 Gene3D Ribonuclease Inhibitor 330 643 IPR032675 -
Vra6g0479 1010 ProSiteProfiles Protein kinase domain profile. 717 988 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g0479 1010 Gene3D Phosphorylase Kinase; domain 1 676 795 - -
Vra6g0479 1010 SMART LRR_sd22_2 546 578 - -
Vra6g0479 1010 SMART LRR_sd22_2 282 308 - -
Vra6g0479 1010 SMART LRR_sd22_2 163 188 - -
Vra6g0479 1010 SMART LRR_sd22_2 450 476 - -
Vra6g0479 1010 SMART LRR_sd22_2 234 260 - -
Vra6g0479 1010 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 9 182 - -
Vra6g0479 1010 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 187 1008 - -
Vra6g0479 1010 Pfam Protein kinase domain 718 986 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g0479 1010 Pfam Leucine Rich Repeat 573 594 IPR001611 GO:0005515
Vra6g0479 1010 Gene3D Ribonuclease Inhibitor 207 329 IPR032675 -
Vra6g0479 1010 SUPERFAMILY RNI-like 96 416 - -
Vra6g0479 1010 Pfam Leucine rich repeat N-terminal domain 51 88 IPR013210 -
Vra6g0479 1010 SUPERFAMILY Protein kinase-like (PK-like) 704 986 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0479 Vra-Chr6 3984822 3988181 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0479 51 889 Receptor kinase-like Gene Family AT4G08850 43.598 0.0 695
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vra6g0479 Pkinase 4.5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0479 - - gmx:100800924 1505.73