Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0471 ATGATAGGGTTTGGAGGGAACAGTTGCAGTGAGCTTTCTGAGATGGACATGATGAACATGGAAACTAATAGGAAGTTTCTTTCTCTGCCTCTTAGTAACAATTCTGGTGCTCAAATGCGCACTGATAGAAGAGTACCTGTCGCTACCAACAGCATCGCTCAGGATCATCACTACACCCACCACAACCCCACCGACACTTGCAGTGTGAGGGATAAAATCATGGCACATCCCCTTTTTCCTCGTCTCTTGTCGTCTTACCTCAATTGCCTAAAGGTTGGAGCACCTCCTGAAGTGGTGGCTAGCTTAGAGGAGTCATGTGCCAAATGTGAATCAATCAATGCATCATCAGGAAGGACAGGAAGTGGTTCTATAGGTGAAGATCCGGCCCTGGACCAGTTCATGGAGGCCTACTGTGAGATGCTCATTAAGTATGAGCAAGAGCTTACGAAACCCTTTAAAGAAGCCATGCTTTTTTTCTCAAGAATTGAGTGTCAGCTGAAAGCCCTAGCAGTTTCATCAGATTTTGGTCAAAGTGAATCATCATCACAGAATGAGGTTGATGTGCATGAAAACAACCTAGACAGTCAAGCTGAAGATCGGGAACTGAAAGTCCAGCTTCTGCGCAAGTATAGTGGATATCTAGGGAGCCTGAAGAAGGAATTTTTGAAGAAGAAAAAGAATGGAAAGTTGCCAAAGGAAGCACGACAGCAACTGCTTGATTGGTGGAACCGGCATTACAAGTGGCCCTACCCTTCGGAATCCCAAAAGCAGGCACTGGCAGAATCCACAGGCCTAGATTTGAAACAGATCAACAACTGGTTCATCAATCAGAGAAAACGTCATTGGAAGCCTTCTGAAGATATGCAGTTTGCGGTGATGGATGCAACGAACTACTACATGGAAAATGTTATGTGCAAGCCATTTCCAATGGATGGCATGCCCATGCTTCTTTAA 954 0.4507 MIGFGGNSCSELSEMDMMNMETNRKFLSLPLSNNSGAQMRTDRRVPVATNSIAQDHHYTHHNPTDTCSVRDKIMAHPLFPRLLSSYLNCLKVGAPPEVVASLEESCAKCESINASSGRTGSGSIGEDPALDQFMEAYCEMLIKYEQELTKPFKEAMLFFSRIECQLKALAVSSDFGQSESSSQNEVDVHENNLDSQAEDRELKVQLLRKYSGYLGSLKKEFLKKKKNGKLPKEARQQLLDWWNRHYKWPYPSESQKQALAESTGLDLKQINNWFINQRKRHWKPSEDMQFAVMDATNYYMENVMCKPFPMDGMPMLL* 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0471 317 ProSitePatterns 'Homeobox' domain signature. 259 282 IPR017970 GO:0000981|GO:0006355
Vra6g0471 317 SMART ELK_2 201 222 IPR005539 GO:0003677
Vra6g0471 317 CDD homeodomain 233 285 IPR001356 GO:0003677
Vra6g0471 317 SUPERFAMILY Homeodomain-like 223 295 IPR009057 -
Vra6g0471 317 Pfam KNOX2 domain 123 169 IPR005541 GO:0003677|GO:0005634
Vra6g0471 317 Gene3D - 219 292 - -
Vra6g0471 317 Pfam KNOX1 domain 69 110 IPR005540 GO:0003677|GO:0005634
Vra6g0471 317 Pfam Homeobox KN domain 241 280 IPR008422 GO:0003677|GO:0006355
Vra6g0471 317 ProSiteProfiles ELK domain profile. 201 221 IPR005539 GO:0003677
Vra6g0471 317 SMART KNOX2_2 120 171 IPR005541 GO:0003677|GO:0005634
Vra6g0471 317 ProSiteProfiles 'Homeobox' domain profile. 221 284 IPR001356 GO:0003677
Vra6g0471 317 PANTHER HOMEOBOX KNOTTED-LIKE PROTEIN 1 308 - -
Vra6g0471 317 SMART KNOX1_2 67 111 IPR005540 GO:0003677|GO:0005634
Vra6g0471 317 SMART HOX_1 223 288 IPR001356 GO:0003677
Vra6g0471 317 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 308 - -
Vra6g0471 317 Pfam ELK domain 201 222 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0471 Vra-Chr6 3920758 3925936 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0471 69 311 Homeobox Transcription Factor Family AT1G62360 68.872 1.80e-111 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Vra6g0471 KNOX2 4.3e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0471 - - gmx:100791704 585.489