Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0462 ATGTTCCTCTTATTGATCACTGATCCAATGGAACTCAGAAAAGGGTTACTGCTGTTATTTTTGTTGCTGGAGTATGTTTGTTGCAATGTTGAAGCAAAGTGTTTGAAGGGATGTGATTTAGCTTTAGCTTCCTATTATGTGAATAGAGGGTTGTCCTTGGATAATATAACACACCTGATGAAATCAAGTGTTGTGTCCAATTCTGACGATATAATAAGCTACAATAAAAACAAAATATTCAATAAAAATGTCTTCATGTTTAACAGATACAATGTTCCATTTCCCTGTGATTGTATCCGTGATGAGTTTCTGGGGCACGTGTTTGAGTACTCAGCTGCTGAAGGTGACACCTATGATTCGATTGCCAAAGTGGAATATGCCGATCTCACCACTGTTGAGCTTTTGAGGAGATTCAACAGTTATGGCCAAAACGGTATACCAAAAAATGCCAAGGTTAATGTCACGGTCAATTGTTCTTGTGGGAACAGCCAGGTTTCACAAGAATATGGGTTGTTTATTACCTATCCACTTAGGCCTGACAATAATTTGCATGATATTGCCAACGAGGCTCATCTTGATGCACAGTTGCTGCAGAATTATAATCCTGGAGTCAATTTCAGCAAAGAGAGTGGGATTGTTTTCATTCCAGGAAGAGATCAATTTGGAGACTATGTTCCCTTGCACCCTAGAAAAACAGGTCTAGCTACGGGTGCTGTTGCTGGAATATCCATAGCAGGAATTTGCGGTCTTCTATTATTAGTAATATGCATATATGTTAAATTCTTCAAGAAGATGGAAGGAGAGAAACCCAAATTGCCAACAGAAAAATCTACGGCGTCTTCAATTCAAGATGCCTCTGGAAGTGCAGAATATGAAACTTCAGGATCCAGTGGGACTGCTACTGCTACTGGCCTTACAGGCATTATGGTGGCAAAATCAATGGAGTTCACATATCAAGAACTGGCAAAGGCTACAAATAACTTCAGCCTGGAGAATAAAATTGGTCAAGGTGGATTTGGAGCTGTGTATTATGCAGAATTGAGAGGCGAGAAAACTGCAATTAAAAAGATGGACGTGCAAGCATCCACTGAATTTCTTTGTGAGTTGAAGGTCTTAACTCACGTTCATCACTTGAATCTGGTGCGTTTGATTGGATATTGCGTTGAAGGATCTCTTTTCCTTGTGTATGAACATATTGACAACGGAAACTTAGGCCAATATTTGCATGGTACAGGGAAAGATCCTTTGACATGGTCTAGCCGAGTGCAAATTGCTCTTGATTCAGCAAGAGGCCTTGAATACATTCACGAGCACACTGTGCCAGTGTATATCCATCGTGATGTAAAATCTGCAAATATATTAATAGACAAAAACTTCCGTGGAAAGGTAGCAGATTTTGGCTTGACTAAACTTATTGAAGTCGGAAGCTCCACACTTCACACTCGTCTTGTGGGAACGTTTGGATACATGCCTCCAGAATATGCTCAATATGGTGACGTCTCTCCAAAAGTAGATGTGTACGCTTTTGGAGTGGTTCTTTATGAACTGATTTCTGCAAAGAATGCTGTTCTGAAAACAGGTGAATTTGTTGCTGAATCCAAGGGTCTTGTAGCTTTGTTTGAAGAAGCACTCAATCAGAGTAATCCTTCCGAAGCTATTCGCAAACTGGTGGATCCCAGGCTTGGAGAAAACTATCCAATTGATTCAGTTCTCAAGATTGCGCAACTTGGGAGAGCTTGTACAAGGGATAATCCACTACTACGCCCAAGTATGAGATCTATAGTTGTTGCTCTTATGACACTTTCATCGCCTACTGAGGATTTCGACGATGAAACTGCTTCCTACGAAAATCAAACTCTCATAAATCTACTGTCTGTAAGATGA 1884 0.4029 MFLLLITDPMELRKGLLLLFLLLEYVCCNVEAKCLKGCDLALASYYVNRGLSLDNITHLMKSSVVSNSDDIISYNKNKIFNKNVFMFNRYNVPFPCDCIRDEFLGHVFEYSAAEGDTYDSIAKVEYADLTTVELLRRFNSYGQNGIPKNAKVNVTVNCSCGNSQVSQEYGLFITYPLRPDNNLHDIANEAHLDAQLLQNYNPGVNFSKESGIVFIPGRDQFGDYVPLHPRKTGLATGAVAGISIAGICGLLLLVICIYVKFFKKMEGEKPKLPTEKSTASSIQDASGSAEYETSGSSGTATATGLTGIMVAKSMEFTYQELAKATNNFSLENKIGQGGFGAVYYAELRGEKTAIKKMDVQASTEFLCELKVLTHVHHLNLVRLIGYCVEGSLFLVYEHIDNGNLGQYLHGTGKDPLTWSSRVQIALDSARGLEYIHEHTVPVYIHRDVKSANILIDKNFRGKVADFGLTKLIEVGSSTLHTRLVGTFGYMPPEYAQYGDVSPKVDVYAFGVVLYELISAKNAVLKTGEFVAESKGLVALFEEALNQSNPSEAIRKLVDPRLGENYPIDSVLKIAQLGRACTRDNPLLRPSMRSIVVALMTLSSPTEDFDDETASYENQTLINLLSVR* 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0462 627 ProSitePatterns Protein kinases ATP-binding region signature. 334 356 IPR017441 GO:0005524
Vra6g0462 627 MobiDBLite consensus disorder prediction 274 299 - -
Vra6g0462 627 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 15 627 IPR044812 GO:0019199|GO:0045087
Vra6g0462 627 ProSitePatterns Serine/Threonine protein kinases active-site signature. 443 455 IPR008271 GO:0004672|GO:0006468
Vra6g0462 627 MobiDBLite consensus disorder prediction 271 299 - -
Vra6g0462 627 Gene3D Phosphorylase Kinase; domain 1 308 398 - -
Vra6g0462 627 ProSiteProfiles Protein kinase domain profile. 328 601 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g0462 627 SMART serkin_6 328 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g0462 627 Pfam Protein tyrosine and serine/threonine kinase 329 596 IPR001245 GO:0004672|GO:0006468
Vra6g0462 627 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-LIKE 15 627 - -
Vra6g0462 627 Gene3D Transferase(Phosphotransferase) domain 1 399 621 - -
Vra6g0462 627 SUPERFAMILY Protein kinase-like (PK-like) 309 598 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0462 Vra-Chr6 3849872 3854124 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0462 10 627 Receptor kinase-like Gene Family AT3G21630 54.808 0.0 667
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Vra6g0462 PK_Tyr_Ser-Thr 4.3e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0462 - K13429 gmx:100776847 1025.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0462 6 3849872 3854124 Vra6g0462 6 3849872 3854124 ECH