Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0449 ATGTCAGATGACATGCTCATTCATTTCTCGTCCAACTCTTCAAACCAATCCGATCATTCTCTGCCTACAAAGATTGCAAAGTTGGAAGCTCGAATGGTTGGTAAGGGTTCCTCAACCTCTTCTCAGCAACCAGGTTGGTCCTCTGTGTCTGTTCCTTCGGCTGGGAAATTTGTTCGAGCTGTTGAAAATTCGGCTGAAGCATCCACTTCAAGTGATTCTGATGATGATAATGGTGGGGCATTCTTGATACAAGCCAACACATCGAAGCGACAAAAACTTCAAGAAGATGGCAACACTAGTGTTTTTGAAAGTGTTGAGGTTGTTACTGATGGAAGGCAAAGTAGTTTGGATGCCGTGGAGACAAAAATGCACATTGAAACGAATAGAAAGAAACATGGTCGTGGAAGAGGGAGTTCTGGTTCGGGTAGAGGCCGGGGTTCCAGAGTTAATGATCAGACCAAAACACTAATTTCTTCTCCAACTGCTTTGGCTTCAAATGGTCAGATCGACAATGTATACCATAAAGACGAGGTTGCATCTTTGCAAGCTAAAGTTGTTGCTTTGGAGGAGGAATTGCGGAAATCAAAGCAAGAAGCAGTTGATTATCAGAATCTTACTCAGCAACTAGAAAAGGAAATGAAGGAGATGACTGATCATGAACAACAAATGAAGCCTAAGAGGATGAAAGTAATATCTGACTTACTGATATCCGTTTCAAAAGCCGAAAGACAAGAAGCAAGACTGAAAGTACGACAAGACTCATTGAGACTTGGAAATGTTGGTGTAATCAGGGCTGGAACTGTTATATCTGAGACCTGGGAAGATGGTCAAGCTTTAAAGGATCTGAATGCCCAGCTTAAACAACTAGTAGAAACCAAGGAGGCAATAGAACGACAGCGCAAATTGTTTAAGAAAAAGCAATCTGATAAGGGTGATGGGACAGATGCAGAGGCTGGATTGCCAGAAGATATTCTAATTCACGATGAAATTTACAAGTGTCGATTAGCTAGCCTTAAAAGAGAAGAGGAGATTGTTCTACGAGAGAGGGATCGGTATGAAATAGAGAAGGGGAGGTTAATTCGTGAGATGAAACGCATACGGGATGAAGATGGTTCACGGTTTAACAACTTTCAGATTCTAAATCATCGTTATGCCCTTCTTAACCTTCTTGGGAAGGGAGGATTCAGTGAGGTGTACAAGGCTTTCGATTTGGTGGACCATAGATATGTTGCTTGCAAACTTCATGGTTTAAATGCTCAATGGAGTGAAGAGAAGAAGCAGAGCTACATACGACATGCAATTCGGGAGTATAATATTCACAAGACTCTTGTACATCGTCACATTGTTCGTTTATGGGACATCTTTGAGATTGATCAGAACACGTTCTGCACCGTTCTAGAGTATTGTAGTGGGAAGGATCTTGATGCTGTTCTTAAAGCAACGCCTATATTATCTGAGAGGGAGGCTAAGGTCATCATAGTTCAGATTTTTCAAGGTCTTATTTACATGAATAAAAGAACACAGAAAATTATCCATTATGATTTGAAGCCTGGAAATGTTCTGTTTGATGAACTTGGTGTTGCCAAAGTGACTGATTTTGGTCTTAGTAAGATAGTGGAGGATGATGTTGGATCCCAAGGTATGGAACTTACATCTCAGGGAGCTGGAACATATTGGTATTTGCCTCCTGAATGCTTTGAGCTCAGCAAGACACCTCTTATATCATCAAAGGTTGATGTCTGGTCTGCTGGTATTTTGTATTATCAAATGCTCTTCGGCCGACGACCTTTCGGGCATCACCAAACCCAAGAGAGAATACTTCGTGAGGACACAATTATTAAGGCTCGGAAGGTTGACTTTCCTTCTAAACCTACCATTTCTAACGAGGCAAAGGATTTTATCCGAAGATGTCTAACATATAACCAGGCTGAGAGACCAGATGTGTTAACCATTGCTCAAGACCCATATCTCACTTTCTCAAAGAAGTAA 1989 0.4133 MSDDMLIHFSSNSSNQSDHSLPTKIAKLEARMVGKGSSTSSQQPGWSSVSVPSAGKFVRAVENSAEASTSSDSDDDNGGAFLIQANTSKRQKLQEDGNTSVFESVEVVTDGRQSSLDAVETKMHIETNRKKHGRGRGSSGSGRGRGSRVNDQTKTLISSPTALASNGQIDNVYHKDEVASLQAKVVALEEELRKSKQEAVDYQNLTQQLEKEMKEMTDHEQQMKPKRMKVISDLLISVSKAERQEARLKVRQDSLRLGNVGVIRAGTVISETWEDGQALKDLNAQLKQLVETKEAIERQRKLFKKKQSDKGDGTDAEAGLPEDILIHDEIYKCRLASLKREEEIVLRERDRYEIEKGRLIREMKRIRDEDGSRFNNFQILNHRYALLNLLGKGGFSEVYKAFDLVDHRYVACKLHGLNAQWSEEKKQSYIRHAIREYNIHKTLVHRHIVRLWDIFEIDQNTFCTVLEYCSGKDLDAVLKATPILSEREAKVIIVQIFQGLIYMNKRTQKIIHYDLKPGNVLFDELGVAKVTDFGLSKIVEDDVGSQGMELTSQGAGTYWYLPPECFELSKTPLISSKVDVWSAGILYYQMLFGRRPFGHHQTQERILREDTIIKARKVDFPSKPTISNEAKDFIRRCLTYNQAERPDVLTIAQDPYLTFSKK* 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0449 662 MobiDBLite consensus disorder prediction 61 80 - -
Vra6g0449 662 PANTHER BNAC09G36930D PROTEIN 1 662 - -
Vra6g0449 662 MobiDBLite consensus disorder prediction 123 151 - -
Vra6g0449 662 ProSiteProfiles Protein kinase domain profile. 384 657 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g0449 662 Coils Coil 171 222 - -
Vra6g0449 662 MobiDBLite consensus disorder prediction 1 22 - -
Vra6g0449 662 CDD STKc_TLK 383 656 - -
Vra6g0449 662 ProSitePatterns Serine/Threonine protein kinases active-site signature. 510 522 IPR008271 GO:0004672|GO:0006468
Vra6g0449 662 Coils Coil 279 306 - -
Vra6g0449 662 SMART serkin_6 384 657 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g0449 662 Gene3D Transferase(Phosphotransferase) domain 1 375 662 - -
Vra6g0449 662 PANTHER MIXED LINEAGE PROTEIN KINASE 1 662 - -
Vra6g0449 662 Coils Coil 335 369 - -
Vra6g0449 662 Pfam Protein kinase domain 385 657 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g0449 662 SUPERFAMILY Protein kinase-like (PK-like) 376 658 IPR011009 -
Vra6g0449 662 ProSitePatterns Protein kinases ATP-binding region signature. 390 413 IPR017441 GO:0005524
Vra6g0449 662 MobiDBLite consensus disorder prediction 63 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0449 Vra-Chr6 3655302 3664008 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0449 367 662 MAP Kinase Kinase Kinase AT3G13530 27.667 5.72e-28 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TLK Vra6g0449 Pkinase 2.2e-60 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0449 K08864 - gmx:100805168 1161.36