Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0436 ATGATAAACATGGGAGAAGGAAGTGACCATCAAGCTATGGCGGATGATGGGAATGTTGAACATATTGGAGTTGGAGTTAATAAGGCTGAAAACAACTCTGGCTCTCATGTCGAGGTTGGGGTTTCTGAGCCATATGTGGGTAGGGAGTTTGATTCTGAAAATGCTGCAAAGACTTTCTACAATGAATATGCCAGACGAGTGGGTTTCAGCTGCAAAGCTGGTGCAAAGGGTCGTTCCAAAGCAGATGGGGAGAATATGTACTGCGAATTTGTCTGTGGCAGGGAGGATTTGAAAAGAAAGCTTGCTGACAGTTGCAATGCAATGATTAGGATCGAGAAGAAGAGCCAAAATAAGTGGGTTATTACACAATTTGTAAAGGAGCATAGCCATTCGATGGCAAACCTTAGTAAGGTGCAGAGTATTAGGCCTCGCAAGCACTTTTCTAGTGTGGGAAGAACCATGCCTGAAACTTACCAAGGAGTGGGGCTTGTTCCAAGCGGTGTGATGTATGTATCTATGGATAAAAATGGCATTCCTACTAAGAATATTCACGGGATTAGGAATATTCCTGCTGTTGCTACTATTGCTGAAACAGTTCACCCGGTTAAAAGTCCGTCAATGATGAATTATGCTGTTAGGCCACCTATTCAAAGGAGGACATTAGGGAGGGATGCTCACAACCTGCTGGAGTACTTTAAGAAAATGCAAGCTGAGAACCCTGGTTTCTTCTATGCAATACAACTTGATGATGATAATCACATGTCTAATGTGTTTTGGGCAGATGCGAGATCAAGGACTGCTTATGGTCATTTTGGTGATACGGTTACTATGGACACAACTTACAGAATAAATCAATATAGAGTGCCCTTTGCTCTGTTCACCGGGGTAAACCATCATGGTCAGATGATTTTGTTTGGTTGTGCACTCCTCTTGGATGATTCTGAGGCTTCTTTTATCTGGCTCTTCAAGACATTTTTGACAGCAATGAATGACCGTTACCCTGTCTCTATCACTACTGATCAAGACAGAGCTATACAAACAGCAATTTCACAAGTTTTTCCTCGAACACGGCACTGTATAAGCAAATGGCATGTCTTGCGAGAAGGCCATGAGAAGTTGGCCTATGTATGCAACATGCATCCAAATTTTCAGATTGAACTATATAATTGTATTAATCTAACAGAAACGGTTGAGGAGTTTGATTCATCGTGGAATTTTATCATGAATAAATATGATCTCACAAAAAATGATTGGCTTCAGTCATTGTACAATGCTCGTGCACAATGGGTTCCAGCATATTTCCGTGATTCATTTTTTGCAGTAATATCTCCTAATCACGGAATTGATAGTTCTTTTTTTTATGGTTTTGCCAACCATCAGGCGACATTGCCAATGTTCTTTAGGCAGTACGAACAAGCTTTAGAGAGCTGGTTTGAAAAAGAATTAGAAACAGATTATGAGACAATTTGCACCACCCCTGTCCCGAGGACACCTTCCCCAATGGAGAAGCAGGCTGCTAATCTCTATACTCGGAGAATATTTTCAAAGTTTCAAGAAGAGCTAGTGGAAACCTTTGCTTATACAGCCAACAGAATTGAAGAAGATGGAGAAAGTAGCATATTCAGGGTTGCAAAATTTGACGATGACCAAAAGGCTTATGTTGTCACATTAAACCTTTCTGAGTTGAGAGCTAACTGTAGTTGCCAAATGTTTGAGTATTCAGGCATTCTATGTAGACATGTTCTAACTGTTTTTACTGTGACTAATGTACTTACATTGCCATCTCATTATATTTTAAAACGGTGGACAAGAAATGCAAAAGTCAGTGCTGGGTCAGTTGAAGATGCTGGTGAATTGCATGTACATGAGTCTTTGGCATCGCGATATAGCAATCTTTGTTGGGAAGCCATTAAATATGCTGAAGAAGGGGCAATGACTGTAGAAACACATGATACTGCAATTGGTGCTCTTCGAGAAAGTGCAAAGAAGATTTCTTTCATGAAAAGAAGTTTGGCCAAAGTTTCCCCACCCAGTCATCCCGTCAGTGGGGCTGCTTATGATGACAGAAAATCCCCTACTTCAACAGCAGATACAAACCCTCTTCTGTGGCCACAGCAGGATGAAATAACGAAGAGGTTTAATCTTAATGATGCTAGTACTCCTGTTCAATCAGTTGCTGATCTAAATTTACCACGGATGACCCCAGTGTCTCTTCAGCGAGATGACGGTACACCTGAAAACATGGTGGTTTATCCCTGTCTGAAATCATTGACATGGGTAATGGAGAACAAGACCTCAACACCAGGGAATAGAGTGGCTGTTATCAATCTTAAGTTGCAAGATTATAGCAGGAATCCATCAACAGAATCGGAAGTTAAGTTTAATCTCTCAAAAGTTACTTTGGAACCGTTGTTTAACCATATGGTCAACATCAGAGATCAACTTTCTGCACCAACTAGGAAGTTTGCTGTATTAAATTTAAAGCTTCCAGTTGCCGATACAAATACCGGTGTGTGTGAAGTCAAGTTTCAGGTGTCCAAGGAAACATTAGTTGCTGTACTACGATCAATGGACTATATACGTGAGCAACTATCGGTTCCTGGCGATGCACAAACAGAAGCTGCTATATTGAAAAGACCTCGGAAGTGA 2649 0.4096 MINMGEGSDHQAMADDGNVEHIGVGVNKAENNSGSHVEVGVSEPYVGREFDSENAAKTFYNEYARRVGFSCKAGAKGRSKADGENMYCEFVCGREDLKRKLADSCNAMIRIEKKSQNKWVITQFVKEHSHSMANLSKVQSIRPRKHFSSVGRTMPETYQGVGLVPSGVMYVSMDKNGIPTKNIHGIRNIPAVATIAETVHPVKSPSMMNYAVRPPIQRRTLGRDAHNLLEYFKKMQAENPGFFYAIQLDDDNHMSNVFWADARSRTAYGHFGDTVTMDTTYRINQYRVPFALFTGVNHHGQMILFGCALLLDDSEASFIWLFKTFLTAMNDRYPVSITTDQDRAIQTAISQVFPRTRHCISKWHVLREGHEKLAYVCNMHPNFQIELYNCINLTETVEEFDSSWNFIMNKYDLTKNDWLQSLYNARAQWVPAYFRDSFFAVISPNHGIDSSFFYGFANHQATLPMFFRQYEQALESWFEKELETDYETICTTPVPRTPSPMEKQAANLYTRRIFSKFQEELVETFAYTANRIEEDGESSIFRVAKFDDDQKAYVVTLNLSELRANCSCQMFEYSGILCRHVLTVFTVTNVLTLPSHYILKRWTRNAKVSAGSVEDAGELHVHESLASRYSNLCWEAIKYAEEGAMTVETHDTAIGALRESAKKISFMKRSLAKVSPPSHPVSGAAYDDRKSPTSTADTNPLLWPQQDEITKRFNLNDASTPVQSVADLNLPRMTPVSLQRDDGTPENMVVYPCLKSLTWVMENKTSTPGNRVAVINLKLQDYSRNPSTESEVKFNLSKVTLEPLFNHMVNIRDQLSAPTRKFAVLNLKLPVADTNTGVCEVKFQVSKETLVAVLRSMDYIREQLSVPGDAQTEAAILKRPRK* 883
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0436 882 Pfam SWIM zinc finger 553 587 IPR007527 GO:0008270
Vra6g0436 882 Pfam MULE transposase domain 275 366 IPR018289 -
Vra6g0436 882 MobiDBLite consensus disorder prediction 675 701 - -
Vra6g0436 882 Pfam FAR1 DNA-binding domain 58 132 IPR004330 -
Vra6g0436 882 SMART 26again6 564 591 IPR006564 GO:0008270
Vra6g0436 882 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 32 806 IPR031052 GO:0006355
Vra6g0436 882 ProSiteProfiles Zinc finger SWIM-type profile. 553 589 IPR007527 GO:0008270
Vra6g0436 882 PANTHER PROTEIN FAR1-RELATED SEQUENCE 3 32 806 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0436 Vra-Chr6 3545517 3550949 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vra6g0436 MULE 1.8e-24 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0436 - - gmx:100807296 1533.85