Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0426 ATGCAGGCTATCTGGTTGATGCTATTTTTGTTGGTGGACATTGCATTGGGGAATTCAGACATTGATGCTCTCCTTGAATTTAAGAAAAGCATTCAGAATGACCCTTCTGGATTAGTTTTTAATTCTTGGAATTCCAAGTCTCTAAATTCTGATGGATGTCCTAGGAACTGGTATGGAATATGGTGCAGTGAAGGCAGTGTTATATCAATCACTCTGGACAATGCTGGTTTGGTTGGTGACTTTAATTTCCATGCAATTCTAGGCCTTGCAATGCTTCGCAACTTGTCAGCTGTGAACAACCAGTTCACTGGAGAACTCTCACATGCTGCTGCAATGGAATCACTTGAATATCTTGATTTGTCCCTCAACAAGTTTAATGGACCGTTACTCTCTAACTTGGTTCAGTTGCGCAAGTTAGTATATCTGAATCTTTCTTCTAATGAACTTGGAGGCCCTCTTAGTATAGAGTTTCACAAACTTGGGAAGTTGAAGTATTTAGATTTGCACATGAATAACTTTTCTGGGGATATAATGCATATCTTTTATCAGATGGGAAGTGTGCTGTATGTTGACTTGAGCAGCAACAGGTTCTCTGGTGCACTGGATTTGGGACTTGTAGATGAATCTTTTCTCTCCTCAATTCAATCTTTAAATGTTAGCCATAATTCCTTGAGTGGTGAGTTATTTGCTCATGATGGTATGCCATACCTTGACAATTTAGAGGTGTTTGATGCTAGTAATAATCAGTTAGAGGGTAATATACCTTCCTTTACTTTTGTGGTATCTCTTCGGATACTTCGACTTGCATTCAACCAGCTCACTGGTTTGCTGCCAGAAGCTTTATTGAAGGAAAATTCAATGATGTTGTCCGAACTGGATCTTAGTCAAAACAAGCTTGAAGGTCCCATTGGAATTATTACCTCGGTGACTCTGAGGAAGCTCAATTTATCTTCAAACAAGTTGTCTGGCCCCTTACCTCTCAGGGTAGGACACTGTGCTGTCATAGATTTTAGTAATAACACGCTATCAGGTAATTTCTCAAGGATTGGATATTGGGGTAACTATGTGGAAGTTGTTCAGTTAAGTACAAACACATTGGTTGGAATGCTTGCAAATGAAACTTCTCAATTTTTAAGGTTAACTGAACTTAAGGCATCCAATAACTTGTTAGAGGGCTTTCTCCCACCAAATTTGGGAACATATCCAGAACTCAAGGAGATTGATCTTAGCCTCAACCAGCTTTCTGGGTTCCTCTTACCAAGCTTTTTTAACTCAACCAAATTGATTAATCTTAACCTCTCCAACAATAAGTTTTCTGGATCAATTCCAATTCAATTTCAACCTCCAAATACTCCTTTGGTTTCTACTGAAAATATTAGTCTGGTGTTTCTTGATCTTTCAAACAACAACTTGAGTGGGCCTCTTCCTTCAAATATGAGTAGGCTTCACAATTTGGCATATCTCAATTTATGCAACAACAAATTGGAAGGTGCTATTCCAGATGACCTTCCAGATGAGTTGAGAGCATTAAATGTGTCCTTCAATAATTTTTCCGGTGTGGTACCTGAAAACTTACAGCATTTTCCCGAATCAGCATTTCATCCAGGAAATACTATGCTGGTGTTTCCTCATTCGCAATCATCACCAAAAGATGCTTCCAACCTAGGTTTCAGGGAACATCGGTTACATAGAAGGTCTGCCACTAGGATAGCCCTTATTGCATGTTTGGTTGCTGGTGCTTTTGTGATGGCTTTTGTGGGCATAATAGTTTACTATAAGGTTCATCATGAAAAAGAAAGGACTTGTAAACAAAATGAAGCTAGAGGTATCACTCAAGAGGGTACTTTCACATCAAATATAGAGACAGTTTACAGAAATTTGGAAGCATTACCACCTTCTCAAAGGGGCTCTTCTGATGCTGCAAGAAACATTCATCCAGTGGGAGAGGAGCCTATGGGTCTTGGGCGTAGTGAATTAGGTAAAGACGAGGAAGAAATGTATTCCCCAATGTCTATTTTGTCACCTTCAAATCCTTCATCTTCTAAAAGCTACCAGTTTGAGAATCCTGATTCCCTCCAAGTATCATCTCCAGATAAACTGGTTGGAGACTTGCACATATTTGATGGGTCCTTGGTACTAACTGCCGAAGAACTTTCATGTGCTCCAGCAGAAGTTATTGGCAGGAGCTGTCATGGAACACTTTACAAAGCAACACTTGACTCTGGTCATGCATTGGCTGTCAAATGGTTAAGAGAAGGAATAACCAAAGGAAAAAAGGAGTTGGCAAGGGAAATAAAGAAACTTGGGACCATCAAGCATCCAAACCTGGTTTCTGTTAAGGGTTACTATCTGGGGCCAAAGGAACATGAGAAACTGATCATATCAAATTACATGAATGCACAATCTTTGGACATTTATCTCCATGAAGTAGATAAAGCAAATCTCGATCCTTTGACTCTTGATGAAAGGGTAAGGGTGGCTATAGAGGTGGCACTGTGTCTACATTTCTTACATGATGAGAAAGCTATACCTCATGGCAATCTCAAATCCACAAACATTTTGCTAGAAACTCCCAACAAAAAGGTTCTCCTCACAGACTACAGCCTGCACAGGATACTCACGGCTGCAGGTACTACCGAGCAAGTTCTGAATGCCGGCGCACTCGGTTACCGGCCGCCGGAGTTTGCTAGATTGAGCAAACCATGCCCTTCCTTGACAAGTGATGTGTATGCATTTGGAGTGGTGTTGTTAGAGCTCATAACAGGAAGAAATTCTGGAGAAATAGTTTCTGGGATTCCAGGGGTAGTTGACCTCACTGATTGGGTGAGGTTTTTGGCTGAACAAGAACGTTGGAGCCAATGCTTTGATAGGTTTCTTCTAGTGGAGAAACATAATGGGGAAAAACCCTCAAAAGTACTTGATGAAATGCTAAAGGTGGCTCTTAGATGCATCCTTCCAGCATCTGATAGGCCTAACATGAAAACAGTCTCTGATGATCTCTCAACAATAATAAGCACTCAACAACAGGCATTATAA 3036 0.4045 MQAIWLMLFLLVDIALGNSDIDALLEFKKSIQNDPSGLVFNSWNSKSLNSDGCPRNWYGIWCSEGSVISITLDNAGLVGDFNFHAILGLAMLRNLSAVNNQFTGELSHAAAMESLEYLDLSLNKFNGPLLSNLVQLRKLVYLNLSSNELGGPLSIEFHKLGKLKYLDLHMNNFSGDIMHIFYQMGSVLYVDLSSNRFSGALDLGLVDESFLSSIQSLNVSHNSLSGELFAHDGMPYLDNLEVFDASNNQLEGNIPSFTFVVSLRILRLAFNQLTGLLPEALLKENSMMLSELDLSQNKLEGPIGIITSVTLRKLNLSSNKLSGPLPLRVGHCAVIDFSNNTLSGNFSRIGYWGNYVEVVQLSTNTLVGMLANETSQFLRLTELKASNNLLEGFLPPNLGTYPELKEIDLSLNQLSGFLLPSFFNSTKLINLNLSNNKFSGSIPIQFQPPNTPLVSTENISLVFLDLSNNNLSGPLPSNMSRLHNLAYLNLCNNKLEGAIPDDLPDELRALNVSFNNFSGVVPENLQHFPESAFHPGNTMLVFPHSQSSPKDASNLGFREHRLHRRSATRIALIACLVAGAFVMAFVGIIVYYKVHHEKERTCKQNEARGITQEGTFTSNIETVYRNLEALPPSQRGSSDAARNIHPVGEEPMGLGRSELGKDEEEMYSPMSILSPSNPSSSKSYQFENPDSLQVSSPDKLVGDLHIFDGSLVLTAEELSCAPAEVIGRSCHGTLYKATLDSGHALAVKWLREGITKGKKELAREIKKLGTIKHPNLVSVKGYYLGPKEHEKLIISNYMNAQSLDIYLHEVDKANLDPLTLDERVRVAIEVALCLHFLHDEKAIPHGNLKSTNILLETPNKKVLLTDYSLHRILTAAGTTEQVLNAGALGYRPPEFARLSKPCPSLTSDVYAFGVVLLELITGRNSGEIVSGIPGVVDLTDWVRFLAEQERWSQCFDRFLLVEKHNGEKPSKVLDEMLKVALRCILPASDRPNMKTVSDDLSTIISTQQQAL* 1012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0426 1011 Gene3D Ribonuclease Inhibitor 19 183 IPR032675 -
Vra6g0426 1011 Pfam Protein tyrosine and serine/threonine kinase 724 999 IPR001245 GO:0004672|GO:0006468
Vra6g0426 1011 SUPERFAMILY L domain-like 355 528 - -
Vra6g0426 1011 Gene3D Phosphorylase Kinase; domain 1 719 797 - -
Vra6g0426 1011 PANTHER OS07G0626500 PROTEIN 1 1004 - -
Vra6g0426 1011 Gene3D Transferase(Phosphotransferase) domain 1 798 1011 - -
Vra6g0426 1011 Gene3D Ribonuclease Inhibitor 184 355 IPR032675 -
Vra6g0426 1011 ProSiteProfiles Protein kinase domain profile. 720 1004 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g0426 1011 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 1 1004 - -
Vra6g0426 1011 MobiDBLite consensus disorder prediction 631 655 - -
Vra6g0426 1011 Gene3D Ribonuclease Inhibitor 356 453 IPR032675 -
Vra6g0426 1011 Gene3D Ribonuclease Inhibitor 454 548 IPR032675 -
Vra6g0426 1011 Pfam Leucine rich repeat N-terminal domain 18 63 IPR013210 -
Vra6g0426 1011 SUPERFAMILY L domain-like 32 330 - -
Vra6g0426 1011 SUPERFAMILY Protein kinase-like (PK-like) 723 1000 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0426 Vra-Chr6 3467504 3472042 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0426 1 991 Receptor kinase-like Gene Family AT1G55610 25.123 3.16e-58 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vra6g0426 PK_Tyr_Ser-Thr 2.9e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0426 - - gmx:100809980 1700.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0426 6 3467504 3472042 Vra6g0426 6 3467504 3472042 ECH