Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0420 ATGTCTTCGTTTGGGACAAATGGCACTGAGGATTCTCTGCCTCCGCCACCACCTGCTATCCCATCAGATGTAGTGCCTATCAAAATGGAGCCGGAGAAAAAGAAGGTCTTAAGGCTTCCAATGGCCAGGCGTGGCCTTGCTTCTAAAGGGATGAAGTTGCGACTTCTCACTAATCACTTTAGAGTGAATGTTGGAAACACTGACGGTCACTTTTTTCAGTACAGTGTATCTCTTTCTTATGAAGATGGACGCCCTGTAGAGGGTAAGGGCGTGGGAAGAAAGGTCCTTGACAGGGTTCAGGAGACCTATAATTCTGAATTAAATGGGAAGGATTTTGCCTATGATGGCGAGAAAACCCTTTTTACCCTTGGCTCTCTTGCTCGTAATCGTCTTGAGTTCACTGTCGTTCTCGAGGACGTTGTCTCTGCTGGCAGAAATAATGGAAATGCCAGCCCTGATGGACATGGAGAAATCAGTGAGAACGACAAGAAGAGAATGAGGCGCCCAAATAGAGCTAAAACTTTTAAAGTTGAGATTAATTTTGCTTCAAAGATTCCACTGCAAGCCATTGTCAATGCTCTCCGTGGACAGGATTCTGATAATTACCAGGAAGCAATAAGAGTTCTTGATATCATTCTGAGGCAGCACGCGGCTAAACAAGGCTGTTTGCTTGTGCGCCAGTCATTCTTCCATAATGATCCCAAGAATTTTGCTGATGTAGGAGGAGGTGTTCTTGGCTGTCGGGGATTTCATTCTAGTTTTAGAACCACCCAGAGTGGCTTGTCACTTAACATAGATGTCTCAACCACTATGATAGTTACCCCTGGGCCTGTGGTGGACTTCCTCATTTCCAATCAGAATGTAAAAGATCCGTTTTCTCTGGACTGGGTAAAGGCCAAGAGAACTCTGAAAAATTTGAGGATTAAAGCAAGTCCATCCAATCAAGAGTATAAAATTACTGGGCTTAGTGACCTCCCGTGCAAAGACCAGCTGTTTACATTAAAGAGAAAGGGTGGAGAAGGTGATGATACTGAGGAGGTGACCGTGTATGATTATTTTGTTAATCGTCGAAACATAGATCTTCGCTACTCAGGTGATCTACCATGTATTAATGTCGGAAAGCCGAAGCGGCCAACATATATTCCCCTTGAGCTTTGCTCTTTGGTATCCCTTCAACGCTATACTAAAGCTCTAACCACACTCCAAAGATCCTCATTGGTGGAGAAATCTAGACAGAAGCCTCCGGAGAGGATGAGAGTGTTGACAGATGCTTTGAGTCGAAGCAATTATGGCTCTGAACCCATGCTTCGTAATTGTGGTATTTCTATCAACTCTGGCTTTACTGAAGTTGAAGGTCGTGTTTTACAAGCTCCAAGGTTAAAGTTTGGAAACGGCGAGGATTTCAATCCAAGAAATGGGAGGTGGAACTTCAATCAAAAGAAATTAGTTAGGCCGGTAAAAATTGAAAAATGGGCTGTGGTTAACTTTTCTGCCCGATGTGATGTACGAGGACTTGTCAGGGATCTCATAAAGTGCGGTCAAATGAAAGGAATTACAATTGAACAACCTTTTGAAGTCTTTGAAGAAGATTTTCGCAATAAACGATCCCCGCCTCTGGTCAGAGTGGAGAAAATGCTTGAGTTTGTGCAATCTAAACTCCCAGGGCCTCCACAATTTCTTCTTTGTCTTCTTCCTGATAGGAAAAATTCTGAACTATATGGTCCGTGGAAGAAGAGGAATCTTGCTGATTTTGGGATTGTTACACAGTGTATAGCACCTCAAAGGGTCAATGATCAGTATTTGACCAATGTTTTACTGAAGATCAATGCCAAGCTTGGAGGCTTGAATTCTATTTTAGGAGCTGAACATGCTCCTTCTATCCCAGTTGTTTCCAGAGCTCCCACCATTGTTATTGGCATGGACGTGTCTCATGGCTCCCCAGGGCAAACCGATATTCCTTCAATTGCAGCGGTGGTTAGCTCTCTGGAGTGGCCTCTAATATCAAAGTATAGAGCATGTGTACGAACCCAGTCTCCGAAGGTTGAAATGATTGACAATTTGTTTAAGAAAGTCTCCGATGGGGTGGATGAAGGCATAATTAGGGAGTTACTTCTTGACTTCTACAGAAGTTCTGGGAATAAAAAGCCTGAGAATATAATCATATTCAGGGATGGAGTCAGTGAGTCCCAGTTCAATCAAGTTTTAAATATCGAGCTCGATCAAATTATAGAGGCTTGCAAGTTTTTAGATGAGAAGTGGAATCCTAAATTTTTGGTTATTGTGGCTCAAAAGAACCACCATACCAAATTCTTTCAAGCAGATGCTCCCGACAATGTTCCTCCTGGAACTGTGATTGATAACAAAATTTGTCATCCTCGTAACTATGACTTTTACATGTGTGCACATGCTGGAATGATTGGTACTAGTAGGCCTACACATTATCATGTTCTCTTAGATGAGATTGGGTTTTCAGCTGATGATCTGCAGGAACTTGTGCACTCATTATCATACGTGTATCAGAGGAGCACCACTGCCATATCTGTTGTTGCTCCAATCTGCTATGCTCACTTGGCTGCTACTCAGATGGGGCAGTTTATGAAATTTGAGGAAAGATCGGAAACAGCTTCTAGTCATAGTGGTGCTCACCCTGTCCCTCAGTTGCCTAAATTGAATGATAATGTCTCTAGTTCTATGTTCTTTTGCTGA 2706 0.4287 MSSFGTNGTEDSLPPPPPAIPSDVVPIKMEPEKKKVLRLPMARRGLASKGMKLRLLTNHFRVNVGNTDGHFFQYSVSLSYEDGRPVEGKGVGRKVLDRVQETYNSELNGKDFAYDGEKTLFTLGSLARNRLEFTVVLEDVVSAGRNNGNASPDGHGEISENDKKRMRRPNRAKTFKVEINFASKIPLQAIVNALRGQDSDNYQEAIRVLDIILRQHAAKQGCLLVRQSFFHNDPKNFADVGGGVLGCRGFHSSFRTTQSGLSLNIDVSTTMIVTPGPVVDFLISNQNVKDPFSLDWVKAKRTLKNLRIKASPSNQEYKITGLSDLPCKDQLFTLKRKGGEGDDTEEVTVYDYFVNRRNIDLRYSGDLPCINVGKPKRPTYIPLELCSLVSLQRYTKALTTLQRSSLVEKSRQKPPERMRVLTDALSRSNYGSEPMLRNCGISINSGFTEVEGRVLQAPRLKFGNGEDFNPRNGRWNFNQKKLVRPVKIEKWAVVNFSARCDVRGLVRDLIKCGQMKGITIEQPFEVFEEDFRNKRSPPLVRVEKMLEFVQSKLPGPPQFLLCLLPDRKNSELYGPWKKRNLADFGIVTQCIAPQRVNDQYLTNVLLKINAKLGGLNSILGAEHAPSIPVVSRAPTIVIGMDVSHGSPGQTDIPSIAAVVSSLEWPLISKYRACVRTQSPKVEMIDNLFKKVSDGVDEGIIRELLLDFYRSSGNKKPENIIIFRDGVSESQFNQVLNIELDQIIEACKFLDEKWNPKFLVIVAQKNHHTKFFQADAPDNVPPGTVIDNKICHPRNYDFYMCAHAGMIGTSRPTHYHVLLDEIGFSADDLQELVHSLSYVYQRSTTAISVVAPICYAHLAATQMGQFMKFEERSETASSHSGAHPVPQLPKLNDNVSSSMFFC* 902
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0420 901 Pfam N-terminal domain of argonaute 53 213 IPR032474 -
Vra6g0420 901 ProSiteProfiles Piwi domain profile. 559 867 IPR003165 GO:0003676
Vra6g0420 901 Pfam Mid domain of argonaute 469 522 IPR032473 -
Vra6g0420 901 Gene3D - 454 620 - -
Vra6g0420 901 Pfam Piwi domain 560 867 IPR003165 GO:0003676
Vra6g0420 901 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 4 900 - -
Vra6g0420 901 CDD PAZ_argonaute_like 275 389 - -
Vra6g0420 901 MobiDBLite consensus disorder prediction 1 24 - -
Vra6g0420 901 Gene3D - 626 901 IPR036397 GO:0003676
Vra6g0420 901 ProSiteProfiles PAZ domain profile. 295 390 IPR003100 GO:0005515
Vra6g0420 901 MobiDBLite consensus disorder prediction 146 167 - -
Vra6g0420 901 CDD Piwi_ago-like 434 861 IPR045246 -
Vra6g0420 901 PANTHER TRANSLATION INITIATION FACTOR 2C, PUTATIVE-RELATED 4 900 - -
Vra6g0420 901 Pfam PAZ domain 279 406 IPR003100 GO:0005515
Vra6g0420 901 SUPERFAMILY Ribonuclease H-like 543 865 IPR012337 -
Vra6g0420 901 SMART Piwi_a_2 559 867 IPR003165 GO:0003676
Vra6g0420 901 Gene3D paz domain 269 394 - -
Vra6g0420 901 Pfam Argonaute linker 1 domain 225 272 IPR014811 -
Vra6g0420 901 SMART DUF1785_2 223 275 IPR014811 -
Vra6g0420 901 Pfam Argonaute linker 2 domain 416 462 IPR032472 -
Vra6g0420 901 SUPERFAMILY PAZ domain 270 430 IPR036085 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0420 Vra-Chr6 3403040 3410635 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0420 43 901 Eukaryotic Initiation Factors Gene Family AT5G43810 34.989 1.92e-163 501
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0420 K11593 - gmx:100779439 1603.19