Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0417 ATGGCCAAGAAACGAAAGCTTCGATCCTCAGACCCTGAGCCCGCCAAACCCATCGAGCCACAGCAACAAGACCAAGAATCAGAAGAACAACTCGACCAGCAAGAGCAACCCAATCCCGAACCAACCTTGGAAGACCCCAACACTATGGCCGTCGACGAACCAACAGAGGAACAGCAGCAAGAACAGCAAATCGCCGAAGGTGAAGAAGAGGAAGAGGAATCAGAGGAGCAACAGGAGCAGGAGCCAGAAACCCTAGAAGAGCAACACGAGCCGGAAGCTCTGGAAGCTGCGAACCACGCCGAAGCAAACGGTGCTGGCGAAGAAGAGAACAACGAAGAGGAAGATGAGGATCTCAGTCTCGAAGACGAGCCCGTGGAGAAACTTCTTGAACCATTCACGAAGGAGCAGCTGCATGCTCTTGTGAAGCAGGCCGTGGAGAGGTTCCCTGAATTCGTCGAGAGCGTTCGCCAGCTCGCCGATGTGGATCCCGCACACCGGAAGATCTTCGTCCACGGCCTCGGCTGGGACGCCACTGCCGAAACCCTAACTTCCGTGTTTGGGAAATACGGTGAGATCGAGGACTGCAAGGCCGTCACCGACAAAGTCTCTGGCAAATCGAAGGGTTACGCTTTCATCCTTTTCAAGCACAGGGATGATGCTCGCAAGGCGCTGAAAAATCCCCAGAAGAAAATTGGTAACCGTACCACTTCTTGTCAGCTGGCCTCTGCTGGCCCTGTTCCGGCGCCCCCGCCGAACGCCAATCCGGTTTCTGAGTATACGCAGAGGAAGATATTTGTGAGCAACGTGAGTGCTGAGATTGATCCCCAAAAACTGCTTGAATTCTTCAAGCAATTTGGGGAGGTTGAGGATGGTCCTCTTGGGCTCGACAAGAACACTGGGAAACCTAAGGGTTTTGCTCTGTTTGTTTATAAGTCTGTGGAGAGTGCTAAAAAGGCTTTGGAAGAACCTCACAAGAACTTTGAAGGCCATACTTTGTATTGTCAGAAGGCTGTTGATGGTCCCAAGGGGAACAAAGGGTATCATCAGTATCACCATCAGCAGCATTCCCATCATCATCACCATCACCATCATCAGCCTCATTATCAGAGAAAGGAAAAGAACAAGTATTCCTCTGGGGGAGGTGGTCCGTCCCATGGCAGTGGTCATTTGATGGCCCCCTCGGCATCTGCTGTGGGGGGTTTCAACCCGGGCGTGCCGGCTCAAGGGTTGAATCCTGCTCTTGGACAGGCGCTAACGGCTTTGCTCACTAACCAGGGAGCTGGATTGGGTCTTGGAAATCTGCTTGGAGGGCTTGGTGGTGCCCCCGTTAACCAGGCAGGGCCACCTGCCCCGTATGGGAATCAGCCTGCTATGGGATATGGGAACCAGCCAGCAATGCAACAGGGATACCAGAATCCTCAAATGGGTCAGAGCAGTGCTGTCAGACCCCACCCTGGTGCTGGCGCTCCTTACATGGGTCATTAG 1485 0.5347 MAKKRKLRSSDPEPAKPIEPQQQDQESEEQLDQQEQPNPEPTLEDPNTMAVDEPTEEQQQEQQIAEGEEEEEESEEQQEQEPETLEEQHEPEALEAANHAEANGAGEEENNEEEDEDLSLEDEPVEKLLEPFTKEQLHALVKQAVERFPEFVESVRQLADVDPAHRKIFVHGLGWDATAETLTSVFGKYGEIEDCKAVTDKVSGKSKGYAFILFKHRDDARKALKNPQKKIGNRTTSCQLASAGPVPAPPPNANPVSEYTQRKIFVSNVSAEIDPQKLLEFFKQFGEVEDGPLGLDKNTGKPKGFALFVYKSVESAKKALEEPHKNFEGHTLYCQKAVDGPKGNKGYHQYHHQQHSHHHHHHHHQPHYQRKEKNKYSSGGGGPSHGSGHLMAPSASAVGGFNPGVPAQGLNPALGQALTALLTNQGAGLGLGNLLGGLGGAPVNQAGPPAPYGNQPAMGYGNQPAMQQGYQNPQMGQSSAVRPHPGAGAPYMGH* 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0417 494 MobiDBLite consensus disorder prediction 1 121 - -
Vra6g0417 494 CDD RRM_RBM24_RBM38_like 262 337 - -
Vra6g0417 494 CDD RRM_RBM24_RBM38_like 166 241 - -
Vra6g0417 494 SUPERFAMILY RNA-binding domain, RBD 246 360 IPR035979 GO:0003676
Vra6g0417 494 SMART rrm1_1 263 335 IPR000504 GO:0003723
Vra6g0417 494 SMART rrm1_1 167 239 IPR000504 GO:0003723
Vra6g0417 494 MobiDBLite consensus disorder prediction 348 370 - -
Vra6g0417 494 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 1 481 - -
Vra6g0417 494 MobiDBLite consensus disorder prediction 342 395 - -
Vra6g0417 494 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 262 340 IPR000504 GO:0003723
Vra6g0417 494 MobiDBLite consensus disorder prediction 107 121 - -
Vra6g0417 494 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 166 243 IPR000504 GO:0003723
Vra6g0417 494 Coils Coil 55 80 - -
Vra6g0417 494 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 168 235 IPR000504 GO:0003723
Vra6g0417 494 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 264 332 IPR000504 GO:0003723
Vra6g0417 494 MobiDBLite consensus disorder prediction 471 494 - -
Vra6g0417 494 SUPERFAMILY RNA-binding domain, RBD 154 247 IPR035979 GO:0003676
Vra6g0417 494 Gene3D - 250 388 IPR012677 -
Vra6g0417 494 MobiDBLite consensus disorder prediction 62 86 - -
Vra6g0417 494 Gene3D - 157 244 IPR012677 -
Vra6g0417 494 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 1 481 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0417 Vra-Chr6 3381511 3384908 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0417 258 341 C2H2 Transcription Factor Family AT2G19380 29.762 2.82e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0417 K12741 - gmx:100783742 700.664