Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0412 ATGAGTCAGCCTAAGATCAAGCGCAGAGTTGGTAAATACGAGGTGGGGAGGACAATTGGTGAAGGTACATTTGCAAAGGTGAAATTTGCAAGGAACTCTGAGACAGGAGAACCTGTGGCTCTTAAAATTCTTGACAAGGAGAAGGTGCTCAAGCACAAGATGGCTGAGCAGATCAGGAGAGAGGTGGCTACAATGAAATTAATCAAGCATCCAAATGTCGTTCGATTGTATGAGGTGATGGGAAGCAAGACAAAAATATATATTGTTTTGGAGTTTGTGACTGGTGGGGAGCTCTTTGACAAAATTGTAAACCATGGACGGATGAGTGAAAGTGAAGCTCGTAGATATTTTCAACAGCTTATAAATGCTGTTGATTATTGCCACAGCAGGGGTGTCTACCACAGAGACCTGAAGCCAGAAAATTTGCTCTTAGATACTTATGGGAACCTTAAAGTTTCCGACTTTGGATTGAGTGCCCTCTCCCAGCAAGTTAGGGATGATGGGCTTCTCCATACTACATGTGGGACACCAAACTATGTTGCTCCAGAGGTCCTTAATGATCGAGGCTATGATGGTGCAACTGCAGACTTGTGGTCATGTGGGGTGATTCTCTTTGTATTGGTTGCAGGTTACTTACCTTTTGATGACCCTAATCTTATGAACCTGTATAAGAAAATCTCAGCTGCTGAATTTACTTGCCCCCCGTGGCTTTCTTTCAGTGCCAGGAAATTGATTACACGAATCTTGGATCCTGATCCCACAACTCGTATCACTATACCTGAGATTTTGGATGATGAATGGTTTAAGAAAGATTATAAGCCTCCTGTTTTTGAGGAGAATGGGGAAATCAACCTTGATGACGTTGAAGCTGTCTTTAAAGATTCTGAAGAGCACCATGTGACAGAGAAGAAAGAAGAGCAGCCAACATCCATGAATGCGTTTGAGTTAATTTCCATGTCCAAAGGGCTGAACCTTGAAAACTTGTTTGATACAGAGCAGGGGTTCAAAAGGGAAACAAGATTCACATCAAAGTCACCTGCAGATGAGATAATCAACAAGATTGAGGAGGCTGCAAAACCTCTTGGCTTTGATGTGCAGAAGAAAAATTACAAGATGAGGCTTGCAAATGTGAAAGCTGGAAGAAAGGGAAACCTTAATGTTGCCACTGAGATATTTCAAGTGGCACCTTCTCTTCACATGGTTGAGGTACGGAAGGCAAAAGGAGACACATTGGAGTTCCATAAGTTCTACAAGAAGCTTTCAACAAGCCTGGATGATGTTGTTTGGAAAACAGAAGATGATATGCAAATGAGAGAAACAAATTGA 1326 0.4208 MSQPKIKRRVGKYEVGRTIGEGTFAKVKFARNSETGEPVALKILDKEKVLKHKMAEQIRREVATMKLIKHPNVVRLYEVMGSKTKIYIVLEFVTGGELFDKIVNHGRMSESEARRYFQQLINAVDYCHSRGVYHRDLKPENLLLDTYGNLKVSDFGLSALSQQVRDDGLLHTTCGTPNYVAPEVLNDRGYDGATADLWSCGVILFVLVAGYLPFDDPNLMNLYKKISAAEFTCPPWLSFSARKLITRILDPDPTTRITIPEILDDEWFKKDYKPPVFEENGEINLDDVEAVFKDSEEHHVTEKKEEQPTSMNAFELISMSKGLNLENLFDTEQGFKRETRFTSKSPADEIINKIEEAAKPLGFDVQKKNYKMRLANVKAGRKGNLNVATEIFQVAPSLHMVEVRKAKGDTLEFHKFYKKLSTSLDDVVWKTEDDMQMRETN* 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0412 441 SUPERFAMILY Protein kinase-like (PK-like) 9 286 IPR011009 -
Vra6g0412 441 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672|GO:0006468
Vra6g0412 441 Pfam NAF domain 308 367 IPR004041 GO:0007165
Vra6g0412 441 Gene3D Phosphorylase Kinase; domain 1 4 92 - -
Vra6g0412 441 ProSiteProfiles Protein kinase domain profile. 13 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g0412 441 SMART serkin_6 13 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g0412 441 ProSiteProfiles NAF domain profile. 306 330 IPR018451 GO:0007165
Vra6g0412 441 Pfam Protein kinase domain 13 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g0412 441 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 3 2 432 - -
Vra6g0412 441 CDD STKc_SnRK3 12 267 - -
Vra6g0412 441 Gene3D Transferase(Phosphotransferase) domain 1 93 275 - -
Vra6g0412 441 CDD CIPK_C 312 421 - -
Vra6g0412 441 ProSitePatterns Protein kinases ATP-binding region signature. 19 42 IPR017441 GO:0005524
Vra6g0412 441 PANTHER - 2 432 - -
Vra6g0412 441 Gene3D Kinase associated domain 1, KA1 305 430 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0412 Vra-Chr6 3332835 3339338 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0412 5 411 CBL-interacting serine-threonine protein kinases AT2G26980 81.327 0.0 702
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Vra6g0412 Pkinase 2.3e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0412 - - gmx:100794566 880.937