Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0411 ATGGGAAACTGCTGCAGAAAACCAGTGGCTCATGTGTCTTCCACAAGTTTCTTTGGAGGCTCAAAGTCTCGAAGTAAGACAAAAGAGAACTCAAAATCTACTGAAGGAAAAGCTCCTTTAAAAACTTCAGGATCAAATGTTAACAAACTCATCTCCAGTAACCTAAAGTCCTTCACCTTCAATGAACTAAAAGAGGCCACTAAGAACTTCAGGCAAGAAAACTTGATTGGAGAAGGAGGGTTTGGGTTTGTATACAAGGGATGGATAGATGAGAACACTTATGCTCCCACAAGACCAGGGACTGGAATTGTTGTTGCCATCAAAAAACTTAAACCAGAAAGTTTTCAAGGCCACAGAGAATGGCTGGCAGAAGTCAATTATCTAAGCCAGCTTCACCATGAAAATCTGGTGAAACTTATTGGTTACTGCTCAGATGGAAAAAACAGGCTTCTAGTTTATGAGTTTATGCATAAAGGAAGTCTGGAAAATCATTTATTTAGAAAAGGTGTTCAGCCTATTCCCTGGACTATCCGGATCAACATTGCAGTTGCTGTTGCAAGAGGACTAACATTTTTACATACCCTGGATACAAATGTTATATATCGTGATTTAAAGGCAGCCAACATCCTACTTGATTCGGATTTCAACCCAAAGCTTTCGGATTTTGGCTTGGCAAGAGATGGTCCTACAGGAGACAACACTCATGTTTCAACCAGAGTTATTGGTACTCATGGTTATGCTGCACCAGAGTATGTAGCTACAGGTCATTTGACCTCAAGGAGTGATGTATACAGCTTTGGAGTTGTGTTGTTAGAGTTACTAACAGGAAGGAGTGTAGTTGAAGATGAGAAACCTGGATTTTCAGAAGAAACACTGGTGGATTGGGCAAGACCATTCCTGAGTGATAGCAGAAGAATTTGGAGAATCATGGACACAAGGTTAGGTGGTCAATACTCCAAGAGAGGAGCACAAGCAGCAGCAATACTTGCACTACGGTGTCTAAATACAGATCCAAAAAACAGACCAACTATGGTGAATGTGCTAGCAGAATTGGAAGCACTAAATTCCTCAAATTCATTCCCAAGAACCCCAAAATCTGGAACTGAGAATCATACAACAAAGCATTCTAGTCATTCCCAAAAATCAGCTACAAATAATAACAGACTATGA 1170 0.4034 MGNCCRKPVAHVSSTSFFGGSKSRSKTKENSKSTEGKAPLKTSGSNVNKLISSNLKSFTFNELKEATKNFRQENLIGEGGFGFVYKGWIDENTYAPTRPGTGIVVAIKKLKPESFQGHREWLAEVNYLSQLHHENLVKLIGYCSDGKNRLLVYEFMHKGSLENHLFRKGVQPIPWTIRINIAVAVARGLTFLHTLDTNVIYRDLKAANILLDSDFNPKLSDFGLARDGPTGDNTHVSTRVIGTHGYAAPEYVATGHLTSRSDVYSFGVVLLELLTGRSVVEDEKPGFSEETLVDWARPFLSDSRRIWRIMDTRLGGQYSKRGAQAAAILALRCLNTDPKNRPTMVNVLAELEALNSSNSFPRTPKSGTENHTTKHSSHSQKSATNNNRL* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0411 389 Gene3D Phosphorylase Kinase; domain 1 44 155 - -
Vra6g0411 389 MobiDBLite consensus disorder prediction 16 45 - -
Vra6g0411 389 SUPERFAMILY Protein kinase-like (PK-like) 46 352 IPR011009 -
Vra6g0411 389 Gene3D Transferase(Phosphotransferase) domain 1 156 378 - -
Vra6g0411 389 ProSitePatterns Protein kinases ATP-binding region signature. 76 109 IPR017441 GO:0005524
Vra6g0411 389 PANTHER OS01G0588500 PROTEIN-RELATED 18 378 - -
Vra6g0411 389 ProSiteProfiles Protein kinase domain profile. 70 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g0411 389 Pfam Protein kinase domain 71 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g0411 389 SMART serkin_6 70 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g0411 389 CDD STKc_IRAK 76 354 - -
Vra6g0411 389 ProSitePatterns Serine/Threonine protein kinases active-site signature. 199 211 IPR008271 GO:0004672|GO:0006468
Vra6g0411 389 MobiDBLite consensus disorder prediction 356 389 - -
Vra6g0411 389 PANTHER TYROSINE KINASE FAMILY PROTEIN 18 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0411 Vra-Chr6 3312922 3317002 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0411 48 357 Glycoside Hydrolase AT3G07070 50.476 1.73e-102 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vra6g0411 Pkinase 2.5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0411 - - pvu:PHAVU_008G205600g 732.25