Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0410 ATGGCTATTGCAGCTCCAGGGCAATTGAACGTTAATGAATCGCCCACTTGTGGATCCAGAAGTGTCGATTGCTTCGAGAAACTGGAGCAAATTGGCGAAGGCACATATGGTCAGGTTTACATGGCTAAAGAGATCAAAACTGGTGAAATTGTTGCTCTGAAGAAAATACGTATGGACAATGAGAGAGAGGGGTTTCCTATAACTGCTATACGAGAAATCAAAATTCTTAAGAAACTACATCATGAAAATGTGATCAAGCTGAAAGAAATTGTGACTTCTCCAGGTCCTGAGAAAGATGAACAGGGGAGGCCAGATGGTAACAAATATAGAGGTGGCATCTATATGGTCTTTGAATACATGGACCATGATTTAACAGGCCTTGCTGACCGACCTGGGATGAGATTTACAGTTCCCCAAATTAAGTGTTACATGAGACAACTGTTGACGGGGCTTCACTATTGTCATGTAAATCAAGTACTCCATCGTGATATCAAAGGCTCAAATCTTCTTATAGACAATGAGGGAAACCTTAAGCTTGCAGATTTTGGACTAGCACGATCGTTTTCTAATGACCAAAATGCTAATCTTACAAATCGTGTCATTACATTATGGTACAGACCTCCTGAGTTGCTGCTTGGGACAACAAAGTATGGGCCTGCTGTAGATATGTGGTCAGTTGGGTGCATTTTTGCTGAGCTTCTTCAAGGGAAGCCTATCTTTCCTGGAAAAGATGAGCCAGAACAATTAAATAAAATATATGAGCTGTGTGGAGCACCAACTGAAATCAACTGGCCTGGGGTTTCTAAGATACCTTATTATAATAAATTTATGCCAACAAGGCCAATGAAAAGACGTTTGAGGGAAGTTTTCCGGCATTTTGATCATCATGCTCTGGAGTTGTTGGAGAAGATGTTGACACTTGATCCAGCACAGAGAATTACTGCGAAAGATGCACTTGATGCTGAGTATTTCTGGACAGATCCATTACCATGTGACCCCAAGAGTTTACCCAAGTACGAGTCATCACATGAGTTTCAGACAAAGAAAAAGCGCCAACAGCAACGGCAAAATGAAGAAATGGCTAAGCGTCAGAAAATGCAGCACCCACAGCAGCACAGTCGTCTTCCCCCCATTCAGCAGTCCGGACAACATGGTCAAATGCGGTCAGGACCAAACCAACAGATTCATGGCTCTCAACCCCCAGTTGCTGCAGGACCTAATCATCATTATGGGAAGCCTAGAGGTCCATCTGGTGGACCAGGAAGATATCCTCCCAATGGGAACCAAGGCGGAGGATACAATCACCCAAATCGAGGAGGTCAAGGTGGTGGTTATGGCACTGGACCTTATCCTCCTCAAGGGCGGGGGGCACCTTATGGGTCCAATAACATGCCTGGTGGTGGTCCTCGTGGTGGCGGTGGTGGAGGCGGTGGCAGTGGGTATGGAGTTGGAGCTCCAAATTATCCCCAACAAGGTGGTCCATATGGGGGTTCAGCACCTGGTCGTGGCTCGAACATGATGGGTGGAAATCGCAATCAACAACAGTATGGTTGGCAGCAGTAA 1563 0.4536 MAIAAPGQLNVNESPTCGSRSVDCFEKLEQIGEGTYGQVYMAKEIKTGEIVALKKIRMDNEREGFPITAIREIKILKKLHHENVIKLKEIVTSPGPEKDEQGRPDGNKYRGGIYMVFEYMDHDLTGLADRPGMRFTVPQIKCYMRQLLTGLHYCHVNQVLHRDIKGSNLLIDNEGNLKLADFGLARSFSNDQNANLTNRVITLWYRPPELLLGTTKYGPAVDMWSVGCIFAELLQGKPIFPGKDEPEQLNKIYELCGAPTEINWPGVSKIPYYNKFMPTRPMKRRLREVFRHFDHHALELLEKMLTLDPAQRITAKDALDAEYFWTDPLPCDPKSLPKYESSHEFQTKKKRQQQRQNEEMAKRQKMQHPQQHSRLPPIQQSGQHGQMRSGPNQQIHGSQPPVAAGPNHHYGKPRGPSGGPGRYPPNGNQGGGYNHPNRGGQGGGYGTGPYPPQGRGAPYGSNNMPGGGPRGGGGGGGGSGYGVGAPNYPQQGGPYGGSAPGRGSNMMGGNRNQQQYGWQQ* 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0410 520 SMART serkin_6 25 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g0410 520 SUPERFAMILY Protein kinase-like (PK-like) 20 332 IPR011009 -
Vra6g0410 520 MobiDBLite consensus disorder prediction 370 400 - -
Vra6g0410 520 Gene3D Phosphorylase Kinase; domain 1 12 121 - -
Vra6g0410 520 PANTHER CELL DIVISION PROTEIN KINASE 5 453 - -
Vra6g0410 520 CDD STKc_CDK9_like 25 324 - -
Vra6g0410 520 MobiDBLite consensus disorder prediction 337 366 - -
Vra6g0410 520 MobiDBLite consensus disorder prediction 505 520 - -
Vra6g0410 520 PANTHER CYCLIN-DEPENDENT KINASE C-2 5 453 - -
Vra6g0410 520 ProSitePatterns Serine/Threonine protein kinases active-site signature. 159 171 IPR008271 GO:0004672|GO:0006468
Vra6g0410 520 ProSitePatterns Protein kinases ATP-binding region signature. 31 54 IPR017441 GO:0005524
Vra6g0410 520 ProSiteProfiles Protein kinase domain profile. 25 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g0410 520 MobiDBLite consensus disorder prediction 335 520 - -
Vra6g0410 520 Gene3D Transferase(Phosphotransferase) domain 1 122 364 - -
Vra6g0410 520 Pfam Protein kinase domain 25 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0410 Vra-Chr6 3306260 3311440 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0410 1 520 Core Cell Cycle Gene Families AT5G10270 75.856 0.0 766
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Vra6g0410 Pkinase 1.1e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0410 K08819 - gmx:100795971 899.812