Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0405 ATGGCTGTCACCTTCTCAGATCTACACACCGAAGAGGGTATCAAATCCCTCGATCAATTCCTTTCTGGGAAAACCTATATTTCTGGGGATCTATTGACAAAGGATGATATCAAAGTGTATGCAGCTGTTGTGGAAAAGCCTGGGGACTCTTTCCCCAATGCTGCCAAGTGGTACGATGTTGTCTCTTCTCAACTTGCCTCAAGCTTCCCTGGGAAGGCTCAAGGGGTTAGATTCAGTACCGTATCTGCTCCAGCTGAAGCTGCACCTGCCAAAGCGGCTGCTACTGCTGATGAAGATGATGATGATGATCTTGATCTCTTTGGCGACGAGACAGAGGAGGATAAGAAGGCAGCAGAAGAAAGGGAGGCTGCTAAAAAGTCTGCCAAGAAAAAAGAGAGTGGCAAGTCTTCTGTCCTACTCGATGTCAAGCCTTGGGATGATGAGACCGACATGAAGAAGCTGGAAGAGGCAGTCCGCAGTATTGAGATGCCTGGTTTATTGTGGGGAGCATCCAAACTGGTGCCAGTGGGATATGGAATCAAGAAGTTGCAGATCATGATGACTATTGTGGATGACCTTGTATCTGTGGACACCCTCATCGAAGAACACCTGACAGTTGAGCCATGCAACGAGTATATCCAAAGCTGTGACATTGTTGCATTCAACAAAATTTAA 675 0.4681 MAVTFSDLHTEEGIKSLDQFLSGKTYISGDLLTKDDIKVYAAVVEKPGDSFPNAAKWYDVVSSQLASSFPGKAQGVRFSTVSAPAEAAPAKAAATADEDDDDDLDLFGDETEEDKKAAEEREAAKKSAKKKESGKSSVLLDVKPWDDETDMKKLEEAVRSIEMPGLLWGASKLVPVGYGIKKLQIMMTIVDDLVSVDTLIEEHLTVEPCNEYIQSCDIVAFNKI* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0405 224 CDD EF1B 138 224 IPR014038 GO:0003746|GO:0006414
Vra6g0405 224 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 1. 100 108 IPR001326 GO:0003746|GO:0005853|GO:0006414
Vra6g0405 224 MobiDBLite consensus disorder prediction 87 107 - -
Vra6g0405 224 Pfam EF-1 guanine nucleotide exchange domain 137 224 IPR014038 GO:0003746|GO:0006414
Vra6g0405 224 Gene3D - 128 224 IPR014717 -
Vra6g0405 224 SUPERFAMILY GST C-terminal domain-like 10 66 IPR036282 -
Vra6g0405 224 SMART EF1_GNE_2 135 224 IPR014038 GO:0003746|GO:0006414
Vra6g0405 224 PANTHER EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER 1 224 - -
Vra6g0405 224 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 2. 213 224 IPR001326 GO:0003746|GO:0005853|GO:0006414
Vra6g0405 224 PANTHER ELONGATION FACTOR 1-BETA 2 1 224 - -
Vra6g0405 224 SUPERFAMILY eEF-1beta-like 132 224 IPR036219 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0405 Vra-Chr6 3267131 3269857 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0405 1 224 Eukaryotic Initiation Factors Gene Family AT5G12110 76.316 4.60e-110 313