Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0404 ATGTCAAGTGGAGCAACGCACTGGTGTTATGCGTGCAGACTACCAATTGTGCTTGATGGGGGAGACAGTCTCTGTCCTTACTGTGATGGAGGTTTTGTACAAGAACTTGATGAGTTGCGAGGAGCAGCACCTGCCCCCCAGCATTCATATTCTTCATCACAGTCCGGAGAGTTTCATCAAATGCCTGACCTTTTTGATGCTATACATGCTTTCATGGGGCAGAGAGGTTCTGACCAGAGATTCGGGCTTATGGATGCTGTTGATAATTTCATGAGGCATAGAATGGCTGGAAGAAACTCAAACTTTGATGTTAGAGCAAGGTCAGGTTCTTTCCCAGCTCCTGAACAGAGTTGGGGTGTTTTCAGTTCTGGTCCTTATTTAATATTTCATGGTCAAGTTCCTGGATTCACCTTGGCCAATGGCAGCCCAAGAGGTGGTCCTAGGCGTGTTGATTTTGGTGATTACTTTATGGGTCCTGGACTGGAAGAACTTATTGAGCAACTCACCATGAATGACCGGCGAGGTCCACCGCCGGCGGCACGTTCTTCGATCGATGCTATGCCTACTATTAGGATAACACAGGCACATCTTCGCTTGGATTCACACTGTCCAGTTTGTAAAGATAAATTTGAACTAGGCACTGAAGCCAGAGAGATGCCTTGCAACCATATCTACCATTCTGACTGCATTGTTCCTTGGTTGGTTCAGCATAACTCGTGTCCTGTTTGCCGTGTTGAGTTGCCACCTCAGGGACAGGTTAATTCCCGCAGTGCACGAAGTTTTGGAGGAAGGAATGCCAGCACCAGCAGTGGCACTGACAGCAGCTCCAGGAGCAGGGAGAACAGCAGCACTCAGAACCATGGAAGGAGAAACCCCTTATCATTTTTGTGGCCATTTCGCTCCTCTTCTAGCTCAAACAATAGTCATTATTCTGAGACTGGTGGAAGCAGCTCTTCAACCACTCCTGATCAGAATAATGGAACAAGTTATAGTGGTTGGCCTTTTGATCACTAG 1014 0.4734 MSSGATHWCYACRLPIVLDGGDSLCPYCDGGFVQELDELRGAAPAPQHSYSSSQSGEFHQMPDLFDAIHAFMGQRGSDQRFGLMDAVDNFMRHRMAGRNSNFDVRARSGSFPAPEQSWGVFSSGPYLIFHGQVPGFTLANGSPRGGPRRVDFGDYFMGPGLEELIEQLTMNDRRGPPPAARSSIDAMPTIRITQAHLRLDSHCPVCKDKFELGTEAREMPCNHIYHSDCIVPWLVQHNSCPVCRVELPPQGQVNSRSARSFGGRNASTSSGTDSSSRSRENSSTQNHGRRNPLSFLWPFRSSSSSNNSHYSETGGSSSSTTPDQNNGTSYSGWPFDH* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0404 337 ProSiteProfiles Zinc finger RING-type profile. 203 244 IPR001841 -
Vra6g0404 337 SMART ring_2 203 243 IPR001841 -
Vra6g0404 337 CDD RING-H2_RNF126_like 203 244 - -
Vra6g0404 337 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 166 250 IPR013083 -
Vra6g0404 337 Pfam zinc-ribbon 6 36 IPR039525 GO:0061630
Vra6g0404 337 Pfam Ring finger domain 202 244 IPR001841 -
Vra6g0404 337 SUPERFAMILY RING/U-box 183 250 - -
Vra6g0404 337 MobiDBLite consensus disorder prediction 252 337 - -
Vra6g0404 337 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 1 320 - -
Vra6g0404 337 PANTHER OS03G0351800 PROTEIN 1 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0404 Vra-Chr6 3261068 3263862 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0404 147 248 C3H Transcription Factor Family AT5G01980 45.192 5.53e-26 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0404 K11982 - gmx:100813674 577.015