Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0403 ATGATGTCTCCTGCATCCCGATCCAAGTCTAAAGACAAAAAAGCTAGCAAGGAAGCCCAGAAAGCTGCTGCAAAGCCTACAGGATCTGGTAATGCAGTGGCTGGTGTTCCAGCCAGTGCTTATAACCCCTTATTAGGAACATTCCATACACTGGACATTTCATCGACACCTACCTCACCTATACATGCTAATGGTCGTTTTCGGAACATAGATGAAACAGATGAGCATCCTGTCAACTCAGTGGTTGCTGGTGTCGAGTATGATTCTGTTTCTAACAATGGTAGTTGGTCTGGTGAGTCCGAAGAACATAAAGAGAAAAGTTCTAATGCCCCTGTTAGATCAGACTCGGTACCAGGAGCTGATAATGACAAACGAGAGAAAATCCGCCAGAAAAATGAGAGGAAACATCAACGGCAGAAAGAAAGGCGAGCACAGGAATTGCATGAGCGGTGTACTGGTTATCTCATGTCGAGGAAACTGGAGGCACTTTCTCAGCAGCTTGTTGCAATGGGCTTTTCTCACGAAAGAGCAACAATGGCACTGATATTGAACGAAGGTAGGGTTGAGGAATCAGTAGCGTGGCTGTTTGAAGGTGGTGAAGAAGCAGATGGTAACAAGGATACAAACATACGTAGGAGCAATTTGAAAATTGACATATCAGATGAGCTAGCTCAGATTGCAGACATGGTAACCAGGTACGATTGCTCAAAACAGGAGGTTGAAAGAGCAGTTGTTAACTGTGACGGTGATCTTGATAAGGCTGCTGAAACCCTGAGAGAGTTGAAACTTGATCCCCCATCTGCTCCGCCAAAGCCAGAGGAAACAGGTGATCCTCTCATCAATAATAATGTAAAGCAGTCAGGAGTTGGAAGTCAGAGCTCAAGGCCACAAACAAAAGCTGTTCCTTTACCAAATCAACCTAAAAAAGATGACAAGGAATTTAACTATACAAAGGCTGCAATAACAATTGGAGTCCCTTCAGATTCCAGTAATAGAAATGTGCAACCTGTAAAGAGAATCCAACCTAAGTCTGAATGGGCTAAGCCCCAACAGGCTACTGTACCAGCTGATAAAAAGTGGCCAAGTTCAGGATCTAATTCTTCTGTCTCTTATTCCCTGCAATCACCTTTGCAAATATTAGCCCCGCCTGCTAAGTCTGAAGCACGTTATGTGCCTGTTGGAGGTGAGTTTAAGAACCTTCAACCTGTAGCATCCAGGGAACCATTAATCATGATGCAGTGGCCCCAAACTGTAAATGCAAAGCAAGTTCCAACCACAACTATGAGTTCATCGCCTCCTGGAATAGCTGCTACTTGGTATACAACTAACGGTCCAGATGCTGTGAGATCTAATGGTTTTTTATCTCATGCCCCGAGCACTAGAAGCCCCAGTCCAAACTACCTTAGCTCTAATCAAAGGTACCACCAACTTCAGTATCAACCTCAACCACAGTTTGTTGGTGGCAGCAGCAATTCAGTAGATCACCAAGCAACCTGCCAAGGGAATAGCAATTGGAATAGAGCAGGTGCAACCCCAACGCTTGCTGCTGCTACTTCTCTAGGACTCTTTTCCGGACTAGGATCAGCTGGTCAATCAGGGGCAACCTCTCCAGTTGACTGGAGCACTGGTGGGTCAATGCAGTTTGATTATACTAACATAGACTGGTCCTTGGATAGAAGTTTAGCTTCACCAAGGTCAAACGGTTCATGGCTAGGATTTTCACCATTTTCAAAGAATAATACTCAGATGTATGACTCAAATGCTTCAGGAGTCGTTTCTCAATCATCAAATGGGAGTATTGTTCCCTTGCCTGGACTGCAAGATGGTGGAGTAGCTTCTTCTGAGACATCTGCTGGTTCCCGGGACTGGGGTTCTCCATTTGAAGGGAAAGATCTATTTAGTTTACCGAGACAGTTTGTTTCTTCTCCTACTCTGTAA 1938 0.4469 MMSPASRSKSKDKKASKEAQKAAAKPTGSGNAVAGVPASAYNPLLGTFHTLDISSTPTSPIHANGRFRNIDETDEHPVNSVVAGVEYDSVSNNGSWSGESEEHKEKSSNAPVRSDSVPGADNDKREKIRQKNERKHQRQKERRAQELHERCTGYLMSRKLEALSQQLVAMGFSHERATMALILNEGRVEESVAWLFEGGEEADGNKDTNIRRSNLKIDISDELAQIADMVTRYDCSKQEVERAVVNCDGDLDKAAETLRELKLDPPSAPPKPEETGDPLINNNVKQSGVGSQSSRPQTKAVPLPNQPKKDDKEFNYTKAAITIGVPSDSSNRNVQPVKRIQPKSEWAKPQQATVPADKKWPSSGSNSSVSYSLQSPLQILAPPAKSEARYVPVGGEFKNLQPVASREPLIMMQWPQTVNAKQVPTTTMSSSPPGIAATWYTTNGPDAVRSNGFLSHAPSTRSPSPNYLSSNQRYHQLQYQPQPQFVGGSSNSVDHQATCQGNSNWNRAGATPTLAAATSLGLFSGLGSAGQSGATSPVDWSTGGSMQFDYTNIDWSLDRSLASPRSNGSWLGFSPFSKNNTQMYDSNASGVVSQSSNGSIVPLPGLQDGGVASSETSAGSRDWGSPFEGKDLFSLPRQFVSSPTL* 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0403 645 SUPERFAMILY UBA-like 162 205 IPR009060 GO:0005515
Vra6g0403 645 MobiDBLite consensus disorder prediction 279 301 - -
Vra6g0403 645 MobiDBLite consensus disorder prediction 325 368 - -
Vra6g0403 645 MobiDBLite consensus disorder prediction 260 312 - -
Vra6g0403 645 MobiDBLite consensus disorder prediction 1 74 - -
Vra6g0403 645 Gene3D - 118 212 - -
Vra6g0403 645 MobiDBLite consensus disorder prediction 90 147 - -
Vra6g0403 645 SMART uba_6 160 197 IPR015940 -
Vra6g0403 645 SMART uba_6 223 260 IPR015940 -
Vra6g0403 645 MobiDBLite consensus disorder prediction 587 629 - -
Vra6g0403 645 MobiDBLite consensus disorder prediction 587 602 - -
Vra6g0403 645 MobiDBLite consensus disorder prediction 48 63 - -
Vra6g0403 645 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 146 198 IPR015940 -
Vra6g0403 645 PANTHER UBIQUITIN-ASSOCIATED/TRANSLATION ELONGATION FACTOR EF1B PROTEIN 2 644 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0403 Vra-Chr6 3251069 3254655 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0403 2 640 EF-hand Containing Proteins AT5G12120 41.780 3.55e-134 405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0403 - - gmx:100798094 1005.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g0018 10 952825 953358 Vra6g0403 6 3251069 3254655 PCT