Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0402 ATGAGGAAGAAACTGGATACTCGTTTCCCTGCGGCCAGGATTAAGAAAATAATGCAAGCTGATGAGGATGTAGGGAAGATTGCAATGGCTGTGCCTCTTTTAGTTTCTAAAGCACTAGAGCTATTCCTACAAGATTTGTGTGATCGAACATATGAGATAACTCTGAGGAGGGGAGCTAAGACTATGAATGCTTTTCATTTAAAACAGTGTGTGCAGACTTTTAACGTCTTTGACTTTCTGAAAGATATTGTCAGCAAGGTTCCTGATTTAGGCGGTTCTGCTGCAAATTGTGATGACCATACTGTCAAGAGGAGGAAAGTTGCTGAAGATGATAATGATAGCCACGAGGAGCCCAAGAGAAATAACAAGGCGGAGCCGGGACAAACCAGTGGCAGAGGAAGGGGTAGGGGAAGAGGAAGGGGTCGTGGCCGTGGAAGTAGAAATGTAGATCAAGAGATGAATTCACAAGCCAAGTGTGCAGAAGATTCTGATGCATTGAAGCAAAATGAGAAGCAGACTCAAAGCAATGAAAGCATGGAAAACGCGTCATCACCTGAAGAAGTTAAGCAGACTTTTCCAGTTAGCAAGCCGGCTCAGGTGTCCATTCGAAATTTTGACTTAAACATGGACCCAGATGAGAATATGGAATCGTTAGCATCACCAACTGCTGTTCCAACTAGTTCATCAGCAAAATCAATATCAGAAGAGAAACATCATGAGGAATATCCTGGATGGTCCTTGTCTGATATGGAAAAAATGACCATTGATCCCATTCAACTAGCTAACATAAATGGAAGGATTGATGAAGATGAAGAGGATTATGATGAAGAAATGTAA 837 0.4205 MRKKLDTRFPAARIKKIMQADEDVGKIAMAVPLLVSKALELFLQDLCDRTYEITLRRGAKTMNAFHLKQCVQTFNVFDFLKDIVSKVPDLGGSAANCDDHTVKRRKVAEDDNDSHEEPKRNNKAEPGQTSGRGRGRGRGRGRGRGSRNVDQEMNSQAKCAEDSDALKQNEKQTQSNESMENASSPEEVKQTFPVSKPAQVSIRNFDLNMDPDENMESLASPTAVPTSSSAKSISEEKHHEEYPGWSLSDMEKMTIDPIQLANINGRIDEDEEDYDEEM* 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0402 278 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 277 - -
Vra6g0402 278 SUPERFAMILY Histone-fold 4 88 IPR009072 GO:0046982
Vra6g0402 278 Gene3D Histone, subunit A 1 86 IPR009072 GO:0046982
Vra6g0402 278 MobiDBLite consensus disorder prediction 232 246 - -
Vra6g0402 278 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 8 71 IPR003958 -
Vra6g0402 278 MobiDBLite consensus disorder prediction 169 202 - -
Vra6g0402 278 MobiDBLite consensus disorder prediction 90 248 - -
Vra6g0402 278 PANTHER HISTONE SUPERFAMILY PROTEIN 1 277 - -
Vra6g0402 278 MobiDBLite consensus disorder prediction 98 123 - -
Vra6g0402 278 MobiDBLite consensus disorder prediction 148 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0402 Vra-Chr6 3235357 3238999 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0402 1 267 CCAAT-HAP5 Transcription Factor Family AT3G12480 47.099 2.06e-60 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Vra6g0402 CBFD_NFYB_HMF 2.2e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0402 K21752 - gmx:100814800 414.846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0402 6 3235357 3238999 Vra6g0402 6 3235357 3238999 ECH