Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0401 ATGTCTTCGTTCTCAAATGAGGATCAAAGTAATGATAATCAGTCACAGGAAAATAATCTAAGGAAAGGGCCATGGACAGCAGAAGAAGATGCAATACTGGCAGAATATGTGACAAAACATGGACCAGGAAATTGGAACATAGTGCAGCAAAACACTGGACTACTTCGTTGTGGCAAAAGTTGTCGTTTAAGGTGGACAAATCATCTAAGACCAGATCTAAGGAGAGGTGCATTCACCAAAGAAGAACAAAGGAAAGTCATTGAGTTACATGCGGAGATGGGAAATAAATGGGCTAAAATGGCACAGAAGTTGCCTGGACGAACAGACAACGAAATCAAGAACTTTTGGAACACTAGACTGAAGAAAAGGAAACGAATTGGCTTAGACCTCTACCCAGATGGCATAAAACCTGTGTCAGATGCCCACAACCCAAACACTACTCTAGCTACCTACACTCATGGTAACGAAGTAGTAGGGACATCATCTCAACATGCCATGTTAAATAATTTCAGTAACACTCAAAATCAACCACTCCCTGTACAACCAATTTCTATGGTACGTGAAAACATGAAACCACCTCAAGAAATGCAACCGTCTGAGGTACCTCGGCAACTACAACTACCTGAAGCAGGTAGATCATCTTATGTACCAGATGTGGTGTTCAACACTCCAAATAAACGACTGCGTGTACTACCAAATTCTATGTTCCAGTAA 714 0.4132 MSSFSNEDQSNDNQSQENNLRKGPWTAEEDAILAEYVTKHGPGNWNIVQQNTGLLRCGKSCRLRWTNHLRPDLRRGAFTKEEQRKVIELHAEMGNKWAKMAQKLPGRTDNEIKNFWNTRLKKRKRIGLDLYPDGIKPVSDAHNPNTTLATYTHGNEVVGTSSQHAMLNNFSNTQNQPLPVQPISMVRENMKPPQEMQPSEVPRQLQLPEAGRSSYVPDVVFNTPNKRLRVLPNSMFQ* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0401 237 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 70 124 IPR017930 -
Vra6g0401 237 ProSiteProfiles Myb-like domain profile. 70 120 IPR001005 -
Vra6g0401 237 CDD SANT 77 120 IPR001005 -
Vra6g0401 237 CDD SANT 24 69 IPR001005 -
Vra6g0401 237 Pfam Myb-like DNA-binding domain 22 69 IPR001005 -
Vra6g0401 237 Pfam Myb-like DNA-binding domain 75 118 IPR001005 -
Vra6g0401 237 SUPERFAMILY Homeodomain-like 19 116 IPR009057 -
Vra6g0401 237 Gene3D - 22 74 - -
Vra6g0401 237 MobiDBLite consensus disorder prediction 1 23 - -
Vra6g0401 237 ProSiteProfiles Myb-like domain profile. 17 69 IPR001005 -
Vra6g0401 237 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 17 69 IPR017930 -
Vra6g0401 237 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 7 197 - -
Vra6g0401 237 MobiDBLite consensus disorder prediction 1 22 - -
Vra6g0401 237 Gene3D - 77 123 - -
Vra6g0401 237 SMART sant 21 71 IPR001005 -
Vra6g0401 237 SMART sant 74 122 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0401 Vra-Chr6 3232380 3233308 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0401 1 166 MYB Transcription Factor Family AT2G26960 54.819 2.49e-61 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vra6g0401 Myb_DNA-binding 3.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0401 K09422 - vra:106763259 477.248