Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0381 ATGGGACGTGGAAGGATACCCATGGATCTGATAGAGAAAGAGAAGGCTAGAAAGACAACATTTCAGAAGAGAAAGAACGGATTAATAAAGAAAGTTTACGAGTTTTCAACACTTTGTTCAGTTGACGTTGGTGTGATTATCTTTGCTTCAAATTTTCTTGATGAACCTGAAACATGGCCACAAGACCCAAGAGAGTTGAAACGTGTGATTCAGAAATATCTGAACACTACCAGTGATAGGCGTCCAAAGGTGTATGATGTGGAAGAGTATTTCGATGAAAGGATGAAAAGAATCGAAGGAGAGATTTCCAAAGTGCACAAAGAGAAGATCCAGCTCACGTATCCAACCTGGGATGACTCTTACAATACTCTTCAAGAGGAACAGCTGAGGATGTTTGTAAGCATTTTGGATGCTAAGCTTGAAGCTTGTAATCAAAGGATGAACATGTTCAAACGAGATTCAAAGGGAAAAGCAATAGCAGAACCAGACAATGATGAAGCACTTGTTCCTTTGTTGGCTCCAAACCAACAAAGGTTTTTCATGCAGAACATGTCTCAAACGCAGGTTTTTCCTACTAATGATAACAATCAAGTACCATATTATCCATGTCATCTCAGCCAAAGTTCTCTACCTTGTTTGTTTCAATTGGGTCATCAAAACTTCAACCAATTGATAGAAAAAAATATAGCAGTGGATTGGAATAATCAAGTTGGTGGAAGTGATCACAGAATGAATACACAACAGGAAGATAGAACAAACAAAAACCAAAACTCATCATTGTGCTATTACAATGCAAATATTCAAACAATGCAGCCGTATAATAATGTTGCTTTGCAAACTCTTCCTGCTGAATTGCAGTGCGATGCAACATTCCAGAGCCTGTCAAATCGACCAGGTCCATCACAAGGATTTCAACCCATTGATCTTTCTAATATGCTTCAACCTCATTTTTTAAACTATATGGAAAGAAGAAAGTAG 978 0.3804 MGRGRIPMDLIEKEKARKTTFQKRKNGLIKKVYEFSTLCSVDVGVIIFASNFLDEPETWPQDPRELKRVIQKYLNTTSDRRPKVYDVEEYFDERMKRIEGEISKVHKEKIQLTYPTWDDSYNTLQEEQLRMFVSILDAKLEACNQRMNMFKRDSKGKAIAEPDNDEALVPLLAPNQQRFFMQNMSQTQVFPTNDNNQVPYYPCHLSQSSLPCLFQLGHQNFNQLIEKNIAVDWNNQVGGSDHRMNTQQEDRTNKNQNSSLCYYNANIQTMQPYNNVALQTLPAELQCDATFQSLSNRPGPSQGFQPIDLSNMLQPHFLNYMERRK* 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0381 325 SMART madsneu2 1 61 IPR002100 GO:0003677|GO:0046983
Vra6g0381 325 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Vra6g0381 325 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 50 IPR002100 GO:0003677|GO:0046983
Vra6g0381 325 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL82 3 207 - -
Vra6g0381 325 SUPERFAMILY SRF-like 2 86 IPR036879 GO:0003677|GO:0046983
Vra6g0381 325 ProSiteProfiles MADS-box domain profile. 1 51 IPR002100 GO:0003677|GO:0046983
Vra6g0381 325 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vra6g0381 325 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vra6g0381 325 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vra6g0381 325 CDD MADS 2 51 - -
Vra6g0381 325 PANTHER MADS BOX PROTEIN 3 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0381 Vra-Chr6 3012253 3013230 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0381 1 202 Type I MADS-box Gene Family AT5G55690 33.014 6.55e-24 97.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vra6g0381 SRF-TF 9.6e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0381 - - gmx:102660566 373.629