Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0380 ATGGCTTCCATAGCGGAACAACCCAACAAAGGTGAGATTCGTGAGAACAAGCAGAAGAATATGGGTGGTGAAGGAAGAAACAGAAGGGTTCTTCAGGATATTGGGAATCTTGTGGCCAAACAAGGCCATGTTGGTATTAATGTGTCTAAACCTGTTGCAAGGAACTTTCGTGCCCAATTGTTGGCCAATGCACAAGACAAGAACAAGAAGTCAAGCACTGAAGTGGAGAATGCTGCGGTGGTAACAAAGGTGAAGGCAGCTGAGAAGCCTAAAGAAGAACCTGAAGTGATAGTGATTAGCTCTGATGATGAAACGGAGGAAAAGGAGAAGAAGCAATATGTTCCTAAAACAAACAAGGCAAGGGACAAAAATGCCAAGGCCTTTAGTTCAGTACTCTCTGCTCGAAGCAAGGCTGCTTGTGGACTCCCCAGGGAGCCGGTCTTGAACATTGATGCAACTGATACGGACAATGAATTGGCAGCAGCGGAGTATATTGATGATATATATGAATTTTACAAAAGTACTGAGAAAGATGGTTGTGTGCATGATTACATGGGTTCGCAGCCAGATATTAATGCCAAGATGAGATCAATCCTTGTGGACTGGTTGATAGAAGTCCATAGAAAATTTGAGCTCATGCCAGAAACTCTCTACTTGACCCTAAACATTGTTGATCGGTTCCTGTCTGTGAAGGCCGTGCCTAGAAGGGAACTTCAGCTTGTTGGCATCAGCTCCATGCTGCTAGCCTCAAAATATGAAGAGATATGGGCACCAGAGGTTAATGACTTTGTGTGCATATCAGACAATGCTTATGTCAGTGAACAAGTGCTGTTGATGGAGAAAACAATCCTTAGGAAGCTTGAGTGGTACTTAACGGTTCCCACACCGTATGTCTTCTTGGTTCGATATATCAAAGCCTCAACTCCATCTGATAAAGAGACGGAATATATGGTGTTTTTCCTTGCTGAGCTTGCCATGATGCACTATCCTACCGTAGTCTTGCACTGCCCTTCTTTGATTGCTGCTTCTGCTGTGCTTGTGGCTCGATGTACTCTTCAAAGGACTCCTTTCTGGACAAGCACTTTGAAGCATTACACAGGCTACTCTGAGGAGCAACTGAGGGATTGCGCCAAAACCCTGATCAACCTTCATGCCACTGCTCCAGAAAGTAAGCTCAGGGCAGTTTACAAGAAATACAGTAGCTCAGATTGCTCCTCTGTTGCTCTTCATCCTCCAGCAAAGAACTTGACCGAACTGTCTTAA 1263 0.4458 MASIAEQPNKGEIRENKQKNMGGEGRNRRVLQDIGNLVAKQGHVGINVSKPVARNFRAQLLANAQDKNKKSSTEVENAAVVTKVKAAEKPKEEPEVIVISSDDETEEKEKKQYVPKTNKARDKNAKAFSSVLSARSKAACGLPREPVLNIDATDTDNELAAAEYIDDIYEFYKSTEKDGCVHDYMGSQPDINAKMRSILVDWLIEVHRKFELMPETLYLTLNIVDRFLSVKAVPRRELQLVGISSMLLASKYEEIWAPEVNDFVCISDNAYVSEQVLLMEKTILRKLEWYLTVPTPYVFLVRYIKASTPSDKETEYMVFFLAELAMMHYPTVVLHCPSLIAASAVLVARCTLQRTPFWTSTLKHYTGYSEEQLRDCAKTLINLHATAPESKLRAVYKKYSSSDCSSVALHPPAKNLTELS* 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0380 420 Gene3D - 167 408 - -
Vra6g0380 420 PANTHER CYCLIN-B1-4 20 415 - -
Vra6g0380 420 CDD CYCLIN 195 284 IPR013763 -
Vra6g0380 420 Pfam Cyclin, N-terminal domain 167 291 IPR006671 -
Vra6g0380 420 MobiDBLite consensus disorder prediction 1 28 - -
Vra6g0380 420 SMART cyclin_7 201 285 IPR013763 -
Vra6g0380 420 SMART cyclin_7 298 382 IPR013763 -
Vra6g0380 420 ProSitePatterns Cyclins signature. 196 227 IPR006671 -
Vra6g0380 420 SUPERFAMILY Cyclin-like 293 415 IPR036915 -
Vra6g0380 420 MobiDBLite consensus disorder prediction 10 26 - -
Vra6g0380 420 SMART Cyclin_C_2 294 413 IPR004367 -
Vra6g0380 420 PIRSF Cyclin_A_B_D_E 2 420 IPR039361 -
Vra6g0380 420 PANTHER CYCLINS 20 415 IPR039361 -
Vra6g0380 420 SUPERFAMILY Cyclin-like 156 291 IPR036915 -
Vra6g0380 420 Gene3D - 181 292 - -
Vra6g0380 420 CDD CYCLIN 292 380 IPR013763 -
Vra6g0380 420 Pfam Cyclin, C-terminal domain 294 412 IPR004367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0380 Vra-Chr6 3003771 3006438 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0380 1 417 Core Cell Cycle Gene Families AT2G26760 52.719 4.06e-148 424
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0380 K21777 - gmx:547782 633.639