Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0373 ATGGCTTTCACACTAGACAGGTGTGAAGACAGCATGGTGTTCACCATGGATTCTCAGAAGTCTGTGCCTGCTCCCTTTCTGACAAAAACATACCAACTTGTTGATGACCCTCTCACTGACCACATTGTGTCTTGGGGTGATGATGAAACCACCTTTGTTGTGAGAAGGCCCCCAGAGTTTGCCAGAGATCTTCTTCCAAACTATTTCAAGCACAACAACTTCTCAAGCTTTGTTAGACAGCTAAATACCTATGGTTTCAAGAAGGTAGCTGCTGATAGGTGGGAGTTTGCAAATGAATACTTCAGAAAAGGATCTAAGCACCTTCTATGTGAAATCCACAGGAGGAAAACCCCTCACCCTTATCAACAACATTACCATATGCATGACCAACCACCACAGCTTCTTCAGCCAGATGAGAATCTGTGTTGGATTGACACTCCTCCATTACCATCTCCTAAGCCAGGCAATGATATCTTAACAGCACTTTCTGAGGACAACCAGAGACTGAGAAGAAAGAACTTCATGCTGTTATCAGAACTCACTCACATGAAGAATCTATACAATGATATCATATATTTCATCCAAAACCATGTAAGTCCTGCTTCCTATGAACAAAGAAGCAGCAGTGCTATTCTGAAGCTGGTAGAATTGGAATCATCACCTCAGTCTCCAAATTTGATCAGACCAGCTAAGAGCCATATCATGGAGAAGTCTTTGGTAAGTTCCAGTGATGAGCCTAATGGTTCTGTGAAGCTCTTTGGTGTTCCTCTCTGTGGCAAAAAGAGATTGCACCCAGGTAACCTTGATCAACAAGAATAG 819 0.4274 MAFTLDRCEDSMVFTMDSQKSVPAPFLTKTYQLVDDPLTDHIVSWGDDETTFVVRRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFKKVAADRWEFANEYFRKGSKHLLCEIHRRKTPHPYQQHYHMHDQPPQLLQPDENLCWIDTPPLPSPKPGNDILTALSEDNQRLRRKNFMLLSELTHMKNLYNDIIYFIQNHVSPASYEQRSSSAILKLVELESSPQSPNLIRPAKSHIMEKSLVSSSDEPNGSVKLFGVPLCGKKRLHPGNLDQQE* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0373 272 ProSitePatterns HSF-type DNA-binding domain signature. 65 89 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra6g0373 272 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 10 265 IPR027725 -
Vra6g0373 272 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-4B 10 265 - -
Vra6g0373 272 SUPERFAMILY "Winged helix" DNA-binding domain 23 115 IPR036390 -
Vra6g0373 272 Gene3D - 18 117 IPR036388 -
Vra6g0373 272 SMART hsfneu3 22 115 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra6g0373 272 PRINTS Heat shock factor (HSF) domain signature 26 49 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra6g0373 272 PRINTS Heat shock factor (HSF) domain signature 64 76 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra6g0373 272 PRINTS Heat shock factor (HSF) domain signature 77 89 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra6g0373 272 Pfam HSF-type DNA-binding 26 115 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0373 Vra-Chr6 2919678 2921450 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0373 20 264 HSF AT1G46264 50.512 1.93e-88 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vra6g0373 HSF_DNA-bind 4.5e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0373 K09419 - gmx:100776060 514.227
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0373 6 2919678 2921450 Vra6g0373 6 2919678 2921450 ECH