Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0369 ATGGGCAACTGTTGCTCAGGTGGCACCAATGATTCTGAAAACAAGGGAGAAACCAACCAACAGAACGACAACCAAGGGGGAACGGCAACCACCCCACCACAATCTAAGCCTAATCATCCTCCCACCAAACACTCCAAGCCTGCCCCCATTGGGCCTGTTCTTGGAAGGCCAATGGAGGATGTTAGAAGTACTTACAGCATGGGGAAAGAGCTGGGGAGAGGCCAGTTTGGTGTCACACATTTGTGCACACACAAGAGCACAGGAAAGCAATATGCCTGCAAAACCATTGCCAAGAGAAAGCTCGTTAATAAGGAGGACATTGAGGATGTTAAGAGGGAGGTCCAGATCATGCACCATCTCTCAGGGCAGCCCAACATTGTGGAGCTTGTCAGTGTTTTTGAAGACAAGCAATCTGTTCATTTGGTTATGGAGTTGTGTGCTGGGGGTGAGCTTTTTGATCGCATCATTGCAAAGGGACATTACACTGAACGTGCAGCAGCTTCCCTCTTGAGAACCATCGTCCAGATTGTCCACACCTGCCATTCCATGGGAGTCATTCACAGAGATCTTAAGCCTGAAAATTTCCTTCTCGCCAGCAAGGAGGAAAATGCACCTCTCAAGGCAACCGATTTCGGTCTCTCAGTTTTTTACAAGCAAGGAGAGCTGTTTAAGGACATTGTTGGAAGCGCATATTACATTGCACCAGAGGTCTTGAAGAGGAAATATGGTCCAGAAGTTGACATTTGGAGTATTGGTGTCATGCTATACATTCTTCTATCTGGTGTTCCACCATTTTGGGCAGAATCCGAAAATGGAATATTCAAGGCAATTCTGCGAGGTCATATAGACTTTACAAGCGATCCATGGCCATCCATTTCGCCTGCAGCAAAAGATCTCGTAAGGAAAATGTTGAATTCGGACCCCAGACAGAGGCTGACAGCGTACGAAGTTCTGAATCACCCATGGATCAAGGAGGATGGAGAAGCACCAGATAAACCTCTTGACAACGCAGTACTGAATAGGCTCAAGCAGTTCAGAGCAATGAACGAATTCAAGAAAGTTGCTCTAAGGGTCATCGCGGGCTGCCTGTCAGAGGAAGAAATCATGGGATTGAAGCAGATGTTCAAGGGTATGGACACTGACAACAGCGGCACCATTACAATTGAAGAGCTCAAACAAGGGCTTGCAAAACAAGGGACCAAGCTAACAGAACAAGAAGTCAAGCAATTAATGGAAGCTGCAGATGCCGATGGCAATGGAACCATTGATTACGATGAATTCATCACAGCAACAATGCACATGAACCGCATGAACAAAGAAGATCATCTTTATACTGCCTTCCAATACTTTGACAAAGATAACAGCGGGTATATTACCATTGAAGAACTAGAACAGGCTCTTATTGAGTTCAACATGCACGATGGTAGGGACATCAGGGATATCATTTCAGAAGTTGATGCAGATAATGATGGCCGGATTAACTACGATGAATTTGCTGCAATGATGAACAAAGGAAACATAGAAGTTAATACCAAGAAGAGGCGTGATTCAACCTTATATTAG 1563 0.4523 MGNCCSGGTNDSENKGETNQQNDNQGGTATTPPQSKPNHPPTKHSKPAPIGPVLGRPMEDVRSTYSMGKELGRGQFGVTHLCTHKSTGKQYACKTIAKRKLVNKEDIEDVKREVQIMHHLSGQPNIVELVSVFEDKQSVHLVMELCAGGELFDRIIAKGHYTERAAASLLRTIVQIVHTCHSMGVIHRDLKPENFLLASKEENAPLKATDFGLSVFYKQGELFKDIVGSAYYIAPEVLKRKYGPEVDIWSIGVMLYILLSGVPPFWAESENGIFKAILRGHIDFTSDPWPSISPAAKDLVRKMLNSDPRQRLTAYEVLNHPWIKEDGEAPDKPLDNAVLNRLKQFRAMNEFKKVALRVIAGCLSEEEIMGLKQMFKGMDTDNSGTITIEELKQGLAKQGTKLTEQEVKQLMEAADADGNGTIDYDEFITATMHMNRMNKEDHLYTAFQYFDKDNSGYITIEELEQALIEFNMHDGRDIRDIISEVDADNDGRINYDEFAAMMNKGNIEVNTKKRRDSTLY* 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0369 520 Gene3D - 364 432 - -
Vra6g0369 520 ProSitePatterns EF-hand calcium-binding domain. 379 391 IPR018247 -
Vra6g0369 520 Gene3D - 341 502 - -
Vra6g0369 520 SMART efh_1 442 470 IPR002048 GO:0005509
Vra6g0369 520 SMART efh_1 370 398 IPR002048 GO:0005509
Vra6g0369 520 SMART efh_1 477 505 IPR002048 GO:0005509
Vra6g0369 520 SMART efh_1 406 434 IPR002048 GO:0005509
Vra6g0369 520 PANTHER SERINE/THREONINE-PROTEIN KINASE 14 511 - -
Vra6g0369 520 CDD STKc_CAMK 65 322 - -
Vra6g0369 520 ProSitePatterns EF-hand calcium-binding domain. 486 498 IPR018247 -
Vra6g0369 520 ProSiteProfiles EF-hand calcium-binding domain profile. 402 437 IPR002048 GO:0005509
Vra6g0369 520 Pfam EF-hand domain pair 371 431 IPR002048 GO:0005509
Vra6g0369 520 Pfam EF-hand domain pair 441 502 IPR002048 GO:0005509
Vra6g0369 520 ProSiteProfiles EF-hand calcium-binding domain profile. 477 508 IPR002048 GO:0005509
Vra6g0369 520 Gene3D Transferase(Phosphotransferase) domain 1 151 331 - -
Vra6g0369 520 MobiDBLite consensus disorder prediction 1 58 - -
Vra6g0369 520 SMART serkin_6 65 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g0369 520 ProSitePatterns Protein kinases ATP-binding region signature. 71 98 IPR017441 GO:0005524
Vra6g0369 520 ProSiteProfiles EF-hand calcium-binding domain profile. 438 473 IPR002048 GO:0005509
Vra6g0369 520 SUPERFAMILY EF-hand 363 510 IPR011992 -
Vra6g0369 520 Gene3D Phosphorylase Kinase; domain 1 67 150 - -
Vra6g0369 520 ProSiteProfiles EF-hand calcium-binding domain profile. 366 401 IPR002048 GO:0005509
Vra6g0369 520 MobiDBLite consensus disorder prediction 1 33 - -
Vra6g0369 520 ProSitePatterns EF-hand calcium-binding domain. 451 463 IPR018247 -
Vra6g0369 520 PANTHER CALMODULIN-DOMAIN KINASE CDPK PROTEIN 14 511 - -
Vra6g0369 520 ProSitePatterns EF-hand calcium-binding domain. 415 427 IPR018247 -
Vra6g0369 520 ProSiteProfiles Protein kinase domain profile. 65 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g0369 520 ProSitePatterns Serine/Threonine protein kinases active-site signature. 185 197 IPR008271 GO:0004672|GO:0006468
Vra6g0369 520 Pfam Protein kinase domain 65 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g0369 520 SUPERFAMILY Protein kinase-like (PK-like) 43 349 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0369 Vra-Chr6 2887091 2890779 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0369 1 519 EF-hand Containing Proteins AT5G12180 78.368 0.0 877
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vra6g0369 Pkinase 2.8e-76 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0369 K13412 - gmx:100820422 980.319
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0369 6 2887091 2890779 Vra6g0369 6 2887091 2890779 ECH