Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0360 TATATACAAACTCATACTCACACAAACACCACATACCTATTACAAGATCTATGTTTCATCTTCTTCAATAGTTCTGTGCTTCCCACACACCATACATCCTACCCTTCATCCACTGTACAAGGAAACTCTATCTTGTTTTTTATTTTTTTTGTTTTTGATCTGAGAAATCAAGGACTTTCAGTTGTGGCTACTACAAGGAGGTTACCTTCAGATTCTGGTGCCTTTGCGGACTGGGCAGGGACTGGTTCTTCCACTGCTGCTGCTGCCGGTGGCCGCGCTGTCCCCGTGGACGACCTCTCCCTTGGTTTCAATGCTGGTCCTGCCGCCCCAGCAGCAGCCACCGGACCCACCACTGGAATGTGGTCCGGTGCCAATAGGTCGATCAATTACCCCGAAATGGGAATGTTCGTGGTGGCGCCAGCCTCCTCTTTCCACCACCATCACCACCACCAACAACAGCCCCCACACGACCCCGTCATGGCAGATTCCCTCAACCCGGCTACTGCACTCGGCGTCGGCGTCATCCCTCTTCTTGCCGCCACGCCGTGTCTGGAATCCGACAACTTCCTCGGAAACAGGCCACGTGGTGGGGGAATTCAGTTTTGGCAAGACCAAGGGCCCCATCAGAGCCACTACATGAAGAAACAGCAACAGCAGGGGCTTCTCGACCAAAGTAACACTAGTTCTGGAAACTTGGTTCAAACCAGTGGCGGCTTAACTGCTTCGGGTACCAGTAGTGGGGGAACTACGTGCCAAGATTGCGGAAACCAGGCCAAGAAAGATTGTACCAATAGAAGGTGTAGGACTTGCTGCAAAAGTCGAGGTTTCGATTGCCCTACCCATGTTAAGAGCACATGGGTTCCCGCCGCACGCCGGAGAGAGCGCCAGCTCATGACTGCGGCCACTGCGGCGGTCGCTGGTTCCAGTGGTTCCACCTCCGGGACTAAAAAACCTAGGCTTATTGCTTCACAAACCACTACAACATCTCACACTTCCACTTCTAACACCACCCCTCCCAGAAGCTTTGACACAAGCTCTAGCCATCAAGATGCGGGCTTCAAGGAGTCATTACCTGGGCAAGTACGTGCACCGGCGGTTTTCAAGTGTGTTAGAGTGACGGCGGTGGAGGATGGGCAAGATGAGTACGCGTACCAGGCTGTGGTGAAGATTGGTGGGCACGTGTTCAAAGGGTTTCTGTATGATCAAGGGGTGGAGAATAGGGATGTGTATCCAAACCTATCTGAGTTGCATTTGGGTGGTGGAAACGGCGGAAGTGGAAGCGGAGGGAGTGGTGGGGTGGGTAGAAATGGGGTGTCTTCTTCTTCTCCGATGATGGATCCTTCTGATGTTTATGCAGGTTCGGGTGGAGGGTTACTTGGGGGTTCTTCTGCTTATGGTAATCCAATGAATTGA 1413 0.5237 YIQTHTHTNTTYLLQDLCFIFFNSSVLPTHHTSYPSSTVQGNSILFFIFFVFDLRNQGLSVVATTRRLPSDSGAFADWAGTGSSTAAAAGGRAVPVDDLSLGFNAGPAAPAAATGPTTGMWSGANRSINYPEMGMFVVAPASSFHHHHHHQQQPPHDPVMADSLNPATALGVGVIPLLAATPCLESDNFLGNRPRGGGIQFWQDQGPHQSHYMKKQQQQGLLDQSNTSSGNLVQTSGGLTASGTSSGGTTCQDCGNQAKKDCTNRRCRTCCKSRGFDCPTHVKSTWVPAARRRERQLMTAATAAVAGSSGSTSGTKKPRLIASQTTTTSHTSTSNTTPPRSFDTSSSHQDAGFKESLPGQVRAPAVFKCVRVTAVEDGQDEYAYQAVVKIGGHVFKGFLYDQGVENRDVYPNLSELHLGGGNGGSGSGGSGGVGRNGVSSSSPMMDPSDVYAGSGGGLLGGSSAYGNPMN* 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0360 470 MobiDBLite consensus disorder prediction 302 353 - -
Vra6g0360 470 MobiDBLite consensus disorder prediction 432 447 - -
Vra6g0360 470 MobiDBLite consensus disorder prediction 198 259 - -
Vra6g0360 470 MobiDBLite consensus disorder prediction 299 357 - -
Vra6g0360 470 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 357 404 IPR006511 -
Vra6g0360 470 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 132 470 - -
Vra6g0360 470 MobiDBLite consensus disorder prediction 203 258 - -
Vra6g0360 470 Pfam Domain of unknown function (DUF702) 248 405 - -
Vra6g0360 470 MobiDBLite consensus disorder prediction 420 470 - -
Vra6g0360 470 MobiDBLite consensus disorder prediction 143 164 - -
Vra6g0360 470 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 132 470 IPR007818 GO:0003700|GO:0006355
Vra6g0360 470 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 250 292 IPR006510 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0360 Vra-Chr6 2765191 2766985 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0360 59 450 C2H2 Transcription Factor Family AT5G12330 49.528 2.58e-97 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Vra6g0360 DUF702 1.5e-61 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0360 - - gsj:114385228 630.172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0360 6 2765191 2766985 Vra6g0360 6 2765191 2766985 ECH