Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0357 ATGAAAGAATCAAGTAAACTGCAATCAGAAGAAAATAAAGTCTCCAATGATAAAAATAAGAAAAGAAAGCTGAAAACACAATCCCAACTTTTTGCCTTGGAGACATTTTATGATGAGCACAAGTACCCCACAGAGGAAATGAAAGCAGAACTTGCTGAGAAGTTACGATTGACAGAAAAGCAAATATCTGGGTGGTTTTGCCACAGAAGGTTAAAGGATAAAAGATTGATGAAAGACGAAGCTGTCGCTAATGGACGGCAAGATCGTTCAAGTGGTGTCATCCAGGATCGTGGCAGTGGACTTGGGCAAGATTCTTGTGGAAGCAGTAAACATGCTGATTATAGGTATCTGGATGCTAAGGAGGTTGAGAGCCATGACTTCTACAACAACGAAATTTCTGTTGCAGACATGACACACAGACATAGGAGCCATTATCCTGAAAATGTTAGTGCAGTGGATGACACATCATCTGAGAGCAGCTCCTTTTTGCAAGAAAGGGCTTTTGCTCAAGGTCAGGATCCATATGATATGGAGCCTTCTAGACATCTTACACCTAACGGAGCTCTACCACCCCTGAATCCCAAAGGTGCAGTTAACCTGGGATACAAACCATCAGGATATTTGAAAGTGAAGGGTGAGATAGAACATGCAGCTATAACTGCTGTTAAGAAGCAATTAGGAAGGCATTACGAGGAAGATGGTCCACTACTTGGTATAGAATTTGATCCGCTTCCTCCAGGGGCCTTTGAGTGTCAAACTGAAGATCCAGCTAATGAAACATTTTGTGTAGCGAATCCTCCGCTTCTGAATTCTCCAGAAATCTCTGCTGCAAAAAAACACAATCTTAGCTCTGATAAACAAGATAAGAAAGCCCGTCAGAATATAAAACAAAGGCAACCTTACTATGGTTATACCAATCATGTTTCGGGAAGGAACCCTTTCCCAGATTTGTATGAAGATTCTACTGGAGAAGCATCTGGCTATAACAGTGCTAAGAATCATAGAATGAGCACCAAGCACGGGGTTGAGGGGATGCGATCTGATTCTGCTTCTAACCATAGTGATCACTTTGAGGAGAAGCTTGCGGTCAAGACGAAAGACTTGATGCTGCACGGTTATGATAAGATCAATCCAAAGAGAATACAAAAGAGTGGACACGTTAAATCTAAACCTTCTAGTTCAATCCGTAGTTCCCGTGTTCCCGTAGATACTGAGGAAAGGGGATTATCTGCTAGGATGGCAAAGGAAGAGATGATTAAGGTGGAGCAGAAAGCAAAAAATACATACCGCGATGTAGATGGAGCAGGGAGGCTTTCAAATGAAATTCTGGTTGCAAAGAGAGCTAAAGTTGACATGCTTCAACAATACCATGTGAAACCATCACCTGTTGCTGAGATGGAGAAAAGGAAAATTCACAGATCTGCTGCAGAGATGCCTTCTAGCTTTAGTGAGGATGAAACTGCTGAAACCAGTTCCTCACTAGATTATTAA 1491 0.4185 MKESSKLQSEENKVSNDKNKKRKLKTQSQLFALETFYDEHKYPTEEMKAELAEKLRLTEKQISGWFCHRRLKDKRLMKDEAVANGRQDRSSGVIQDRGSGLGQDSCGSSKHADYRYLDAKEVESHDFYNNEISVADMTHRHRSHYPENVSAVDDTSSESSSFLQERAFAQGQDPYDMEPSRHLTPNGALPPLNPKGAVNLGYKPSGYLKVKGEIEHAAITAVKKQLGRHYEEDGPLLGIEFDPLPPGAFECQTEDPANETFCVANPPLLNSPEISAAKKHNLSSDKQDKKARQNIKQRQPYYGYTNHVSGRNPFPDLYEDSTGEASGYNSAKNHRMSTKHGVEGMRSDSASNHSDHFEEKLAVKTKDLMLHGYDKINPKRIQKSGHVKSKPSSSIRSSRVPVDTEERGLSARMAKEEMIKVEQKAKNTYRDVDGAGRLSNEILVAKRAKVDMLQQYHVKPSPVAEMEKRKIHRSAAEMPSSFSEDETAETSSSLDY* 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0357 496 MobiDBLite consensus disorder prediction 382 408 - -
Vra6g0357 496 ProSiteProfiles 'Homeobox' domain profile. 16 76 IPR001356 GO:0003677
Vra6g0357 496 MobiDBLite consensus disorder prediction 464 496 - -
Vra6g0357 496 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 282 495 - -
Vra6g0357 496 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 281 - -
Vra6g0357 496 SUPERFAMILY Homeodomain-like 18 83 IPR009057 -
Vra6g0357 496 MobiDBLite consensus disorder prediction 1 24 - -
Vra6g0357 496 CDD homeodomain 20 75 IPR001356 GO:0003677
Vra6g0357 496 Coils Coil 7 27 - -
Vra6g0357 496 Pfam Homeodomain 20 75 IPR001356 GO:0003677
Vra6g0357 496 Gene3D - 8 92 - -
Vra6g0357 496 MobiDBLite consensus disorder prediction 480 496 - -
Vra6g0357 496 MobiDBLite consensus disorder prediction 279 295 - -
Vra6g0357 496 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 281 - -
Vra6g0357 496 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 282 495 - -
Vra6g0357 496 MobiDBLite consensus disorder prediction 81 107 - -
Vra6g0357 496 MobiDBLite consensus disorder prediction 88 106 - -
Vra6g0357 496 MobiDBLite consensus disorder prediction 278 354 - -
Vra6g0357 496 SMART HOX_1 18 80 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0357 Vra-Chr6 2709302 2714743 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0357 3 495 Homeobox Transcription Factor Family AT4G03250 39.074 1.47e-83 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Vra6g0357 Homeodomain 4.8e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0357 - - gmx:100803515 800.431
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0357 6 2709302 2714743 Vra6g0357 6 2709302 2714743 ECH