Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0356 ATGGAAGGGTTCGGAACCGGCCCTGTGGAAAGAGACATTGAGCAGGCCATTACTGCTTTAAAGAAAGGGGCCTGCTTGCTCAAGTATGGAAGAAGGGGAAAACCCAAGTTTTGCCCCTTTCGTCTTTCCAATGATGAATCTGTTTTGATATGGTTCTCAGGGAAAGAAGAGAAACACCTTAAACTGAGTCATGTCTCTAGAATTATATCTGGACAACGCACACCTATCTTTCAAAGATATCCACGACCTGAGAAAGAATACCAGTCATTCTCTCTTATCTACAATGATAGGTCACTGGACTTGATATGCAAGGATAAAGATGAAGCTGAAGTCTGGTTCAGTGGTTTGAAAGCATTGATATCCCGTAGCCATCACCGGAAGTGGAGAACAGAGTCAAGAAGTGAAGGTATTCCATCCGAGGCTAATAGTCCTCGAACTTACACAAGAAGAAGTTCTCCGTTAAATTCTCCCTTTGGCAGTAATGAAAGCCTGAAAAAGGATAGCGGGGATCACCTTCGCCTTCATAGCCCATACGAGAGTCCCCCTAAGAATGGTTTGGATAAAGCATTGGATGTGGTTTTATATGCTGTCCCTCAAAAGGCTTTCTATCCTCCAGATTCTGCCAGTGCTTCAGTACATTCTGTGTCGTCTGGAGGATCAGACAGTATGCATGGTCACATGAAGACAATGGGGATGGATGCTTTTAGAGTTAGTCTATCAAGTGCTGTTAGCACATCTAGCCAAGGTTCTGGTCATGATGATGGTGATGCTCTAGGGGATGTTTTCATTTGGGGGGAAGGCACAGGTGATGGTGTTCTGGGTGGTGGGAATAATCGAGTTGGGAGTTGTTCGGGTGTGAAAATGGATTCTCTATTTCCAAAAGCCTTGGAGTCTGCAGTAGTTCTTGATGTGCAGAATATTGCTTGTGGTGGACGGCATGCGGCCCTAGTGACCAAACAAGGTGAAATTTTCTCGTGGGGGGAGGAATCCGGTGGCAGACTTGGGCATGGTGTTGACTCTGATGTGCTCCATCCAAAGCTTATTGATGCTCTAAGCAATACAAATATTGAACTTGTAGCTTGTGGGGAATATCACACATGTGCTGTGACACTTTCTGGTGATCTTTATACGTGGGGTAATGGTGCATACAACTATGGCCTTCTTGGACATGGAAATCAAGTGAGCCACTGGGTACCAAAGAGAGTAAATGGTCCCTTGGAAGGCATACATGTTTCATATATTTCCTGTGGACCATGGCACACTGCTGTTGTGACATCTGCTGGTCAATTATTTACTTTTGGTGATGGAACATTTGGTGCTTTGGGTCATGGAGACCGAAAAAGTGTTTCATTACCAAGGGAAGTAGAATCCCTCAAGGGTCTTCGAACTGTGCGGGCTGCGTGTGGTGTTTGGCACACGGCTGCAGTTGTGGAAGTCATGGTTGGAAATTCAAGTTCCAGCAACTGCTCTTCAGGGAAGCTGTTTACTTGGGGTGATGGAGACAAAGGTCGACTTGGGCATGGTAGTAAGGAAGAAAAACTTGTTCCTACCTGTGTTGCGCTCATTGAACACAATTTTTGTCAAGTTGCTTGTGGACATAGTCTCACTGTTGCACTTACCACCTCTGGCCATGTCTATACAATGGGCAGTCCTGTCTATGGCCAATTAGGCAATCCTCAGGCAGATGGGAAGCTACCAATTCGTGTTGAAGGGAAATTGTCAAAAAGTTTTGTGGAGGAGATAGCTTGTGGTGCATATCACGTTGCAGTTTTAACTTCAAGGACTGAAGTTTACACATGGGGAAAGGGTGCAAATGGCCGTTTAGGCCATGGGGATACAGATGATAGAAATTCCCCAACATTAGTAGAAGCTCTGAAGGACAAAGATGTCAAAAGTATTGCTTGTGGAACTAATTTCACTGCAGCTATATGTCTGCATAAGTGGGTTTCTGGTATTGACCAGTCTATGTGTTCTGGCTGTCGAATGCCATTTAATTTCAAAAGAAAACGCCACAATTGTTATAATTGTGGACTTGTTTTTTGCCATTCATGTAGCAGTAAGAAGTCTCTTAAGGCTTCAATGGCACCAAACCCGAACAAACCTTATCGTGTCTGTGATAATTGTTTTAACAAACTTAGGAAAACAGTAGAAACTGATTCTTCGTCTCATTCTTCTGTGAGCAGAAGAGGAAGTGTCAATCATGGGTCTCTGGAGTTAATTGATAAGGATGACAAATTAGATTCTAGATCTCGAAATCAGCTTGCCAGGTTTTCTTCAATTGAATCCTTCAAACAAGTGGAAAGCAGATCTTCAAAGAAAAACAAGAAATTGGAATTCAACAGCAGCCGTGTCTCGCCTGTTCCAAATGGGGGTTCACAATGGGGAGCATTGAATATTTCTAAATCTTTTAATCCTGTTTTTGGATCATCAAAGAAATTTTTCTCAGCTTCTGTTCCTGGATCTAGAATTGTTTCCCGAGCAACATCCCCAATATCTAGACGACCTAGTCCACCTCGTTCAACTACACCGACCCCAACGCTAGGAGGTCTTACATCACCAAAGATAGTTGTGGATGATGCTAAGAGGACTAACGATAGCCTCAGTCAGGAGGTTATTAAATTAAGATCACAGGTGGNAAACCTGACTCGGAAGGCCCAACTTCAAGAAGTTGAGCTGGAAAGAACAACTAAACAGCTAAAAGATGCAATAGCAATTGCTGGGGAAGAAACTGCCAAATGCAAAGCAGCAAAGGAAGTAATAAAGTCACTCACTGCTCAGTTGAAGGACATGGCTGAGAGGCTACCTGTAGGACCTGCTAGGAGTGTGAAATCACCGTCTCTTGCTTCTTCTTTTGGTTCTAATCCTTGTTCCAATGATGTTAACTATGCTTCCATTGACCGATTAAATATTCAAGCATTAAGTCCAGAGGCAGAATTAACTGCATCAAACAACCAGTTACTTTCAAATGGATCAGGCACTGTTAGTAACCGAAGTGCAGGTCACAATAAAATGAGCCAGTCTGATTCAACAAATAGAAATGGGAGCAGAACAAAAGACTGTGAATCCCGTAGTGAAAGTGAATGGGTTGAGCAAGATGAACCTGGTGTTTATATTACGCTCACCTCCCTTCCAGGAGGTAAAATAGAGCTTAAGCGAGTTCGCTTCAGTNGGAAGAGGTTCAGTGAGAAGCAAGCAGAGCAATGGTGGGCTGAGAATCGNGCAAGAGTATATGAACAGTACAATGTGCTCATGATTGACAAGTCTTCTGTCGGTGTTGGGGGTGAGGACCTGGCTCATTGA 3300 0.4361 MEGFGTGPVERDIEQAITALKKGACLLKYGRRGKPKFCPFRLSNDESVLIWFSGKEEKHLKLSHVSRIISGQRTPIFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAEVWFSGLKALISRSHHRKWRTESRSEGIPSEANSPRTYTRRSSPLNSPFGSNESLKKDSGDHLRLHSPYESPPKNGLDKALDVVLYAVPQKAFYPPDSASASVHSVSSGGSDSMHGHMKTMGMDAFRVSLSSAVSTSSQGSGHDDGDALGDVFIWGEGTGDGVLGGGNNRVGSCSGVKMDSLFPKALESAVVLDVQNIACGGRHAALVTKQGEIFSWGEESGGRLGHGVDSDVLHPKLIDALSNTNIELVACGEYHTCAVTLSGDLYTWGNGAYNYGLLGHGNQVSHWVPKRVNGPLEGIHVSYISCGPWHTAVVTSAGQLFTFGDGTFGALGHGDRKSVSLPREVESLKGLRTVRAACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGSKEEKLVPTCVALIEHNFCQVACGHSLTVALTTSGHVYTMGSPVYGQLGNPQADGKLPIRVEGKLSKSFVEEIACGAYHVAVLTSRTEVYTWGKGANGRLGHGDTDDRNSPTLVEALKDKDVKSIACGTNFTAAICLHKWVSGIDQSMCSGCRMPFNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNCFNKLRKTVETDSSSHSSVSRRGSVNHGSLELIDKDDKLDSRSRNQLARFSSIESFKQVESRSSKKNKKLEFNSSRVSPVPNGGSQWGALNISKSFNPVFGSSKKFFSASVPGSRIVSRATSPISRRPSPPRSTTPTPTLGGLTSPKIVVDDAKRTNDSLSQEVIKLRSQVXNLTRKAQLQEVELERTTKQLKDAIAIAGEETAKCKAAKEVIKSLTAQLKDMAERLPVGPARSVKSPSLASSFGSNPCSNDVNYASIDRLNIQALSPEAELTASNNQLLSNGSGTVSNRSAGHNKMSQSDSTNRNGSRTKDCESRSESEWVEQDEPGVYITLTSLPGGKIELKRVRFSXKRFSEKQAEQWWAENRARVYEQYNVLMIDKSSVGVGGEDLAH* 1100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0356 1099 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 543 594 IPR000408 -
Vra6g0356 1099 MobiDBLite consensus disorder prediction 1014 1028 - -
Vra6g0356 1099 MobiDBLite consensus disorder prediction 131 183 - -
Vra6g0356 1099 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 373 427 IPR000408 -
Vra6g0356 1099 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 466 476 IPR000408 -
Vra6g0356 1099 Pfam FYVE zinc finger 647 713 IPR000306 GO:0046872
Vra6g0356 1099 MobiDBLite consensus disorder prediction 825 854 - -
Vra6g0356 1099 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 259 320 IPR000408 -
Vra6g0356 1099 SUPERFAMILY FYVE/PHD zinc finger 647 718 IPR011011 -
Vra6g0356 1099 SUPERFAMILY RCC1/BLIP-II 258 648 IPR009091 -
Vra6g0356 1099 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 307 317 IPR000408 -
Vra6g0356 1099 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 651 713 IPR017455 -
Vra6g0356 1099 MobiDBLite consensus disorder prediction 981 1013 - -
Vra6g0356 1099 MobiDBLite consensus disorder prediction 981 1028 - -
Vra6g0356 1099 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 660 720 IPR013083 -
Vra6g0356 1099 PRINTS Chromosome condensation regulator RCC1 signature 304 317 IPR000408 -
Vra6g0356 1099 PRINTS Chromosome condensation regulator RCC1 signature 323 339 IPR000408 -
Vra6g0356 1099 PRINTS Chromosome condensation regulator RCC1 signature 373 389 IPR000408 -
Vra6g0356 1099 PRINTS Chromosome condensation regulator RCC1 signature 414 430 IPR000408 -
Vra6g0356 1099 PRINTS Chromosome condensation regulator RCC1 signature 430 444 IPR000408 -
Vra6g0356 1099 PRINTS Chromosome condensation regulator RCC1 signature 532 550 IPR000408 -
Vra6g0356 1099 PRINTS Chromosome condensation regulator RCC1 signature 590 611 IPR000408 -
Vra6g0356 1099 Gene3D - 12 129 IPR011993 -
Vra6g0356 1099 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 492 542 IPR000408 -
Vra6g0356 1099 CDD PH_PLC_plant-like 11 121 - -
Vra6g0356 1099 PANTHER INACTIVE PHOSPHOLIPASE C-LIKE PROTEIN 2 15 1085 - -
Vra6g0356 1099 MobiDBLite consensus disorder prediction 135 163 - -
Vra6g0356 1099 Gene3D - 227 488 IPR009091 -
Vra6g0356 1099 Pfam Pleckstrin homology domain 14 120 IPR001849 -
Vra6g0356 1099 ProSiteProfiles BRX domain profile. 1026 1081 IPR013591 -
Vra6g0356 1099 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 428 479 IPR000408 -
Vra6g0356 1099 SMART fyve_4 645 714 IPR000306 GO:0046872
Vra6g0356 1099 Coils Coil 857 878 - -
Vra6g0356 1099 SUPERFAMILY PH domain-like 12 120 - -
Vra6g0356 1099 Gene3D - 489 659 IPR009091 -
Vra6g0356 1099 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 15 1085 - -
Vra6g0356 1099 Coils Coil 880 898 - -
Vra6g0356 1099 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 595 646 IPR000408 -
Vra6g0356 1099 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 321 372 IPR000408 -
Vra6g0356 1099 CDD FYVE_like_SF 656 709 - -
Vra6g0356 1099 Pfam Regulator of chromosome condensation (RCC1) repeat 321 369 IPR000408 -
Vra6g0356 1099 Pfam Regulator of chromosome condensation (RCC1) repeat 596 643 IPR000408 -
Vra6g0356 1099 Pfam Regulator of chromosome condensation (RCC1) repeat 372 424 IPR000408 -
Vra6g0356 1099 Pfam Regulator of chromosome condensation (RCC1) repeat 428 476 IPR000408 -
Vra6g0356 1099 Pfam Regulator of chromosome condensation (RCC1) repeat 491 539 IPR000408 -
Vra6g0356 1099 Pfam Regulator of chromosome condensation (RCC1) repeat 542 591 IPR000408 -
Vra6g0356 1099 Pfam Unstructured region between BRX_N and BRX domain 950 1019 - -
Vra6g0356 1099 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 414 424 IPR000408 -
Vra6g0356 1099 Pfam Transcription factor regulating root and shoot growth via Pin3 1025 1080 IPR013591 -
Vra6g0356 1099 Pfam Transcription factor BRX N-terminal domain 908 941 IPR027988 -
Vra6g0356 1099 Coils Coil 913 933 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0356 Vra-Chr6 2688593 2696866 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0356 917 1090 Major Intrinsic Protein MIP AT1G31880 32.222 1.71e-14 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0356 - - gmx:100802464 1991.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0356 6 2688593 2696866 Vra6g0356 6 2688593 2696866 ECH