Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0351 ATGGCTTTCTTCAGGAACTTTACAAATGATACAGTCTCCCATGGTGTCATGGAAGATAAAAGCCAAGGACAGAATGCAAATAGAACTCATAGATCAGTAGGTAATGAGTGTACTGATGCAACTTCTAGCGAGAAAGAATTTGATATGAACATGGAGGCACAATATGAGAGTGAAGGCGAACCAAATGGTTCCGGGAGACTGCAAACTGAGGCAACAATGGATGACAGAGATGCTGTGAAGGACTCAAACTTGCAGACTGCTGGTAGTAAAACAGCTACTATGGGAAGGTGGGGTTCAACTTTTTGGAAGGACTGTGGGCAAATGGGCCCTCAAAATGGTTCTGAATCTGGGCAGGAATCAAAAAGTGGTTCAGATTATAGAAATGCTGATGGGTCTGAAGATAATTCATTGGATGGAAGAGCAGAAAGATTAGACTCAGATGATGATGATGGACAAAAGGAGGCAGGAAAAGGTCCCAGAGGTCTCTCAGATGTTCCTGCAGAAGAGATGTTGTCGGATGAGTATTATGAGCAGGATGGGGAAGAGCAAAGTGATTCACTGCATTACGGTGGTATCAAAAAGCCATCTGAATCAAATTCATGGCCACAACGGATGTCATCCACTGCAAATAGAACTTTGCATAGGAATTCAAGGTTTTCAGACGACGCTGAAGAAGATGACGATGATGATGGAGATAATGATAACGATGGTGATGATGCTGATTATGAAGAAGAGGATGAAGCTGATGAAGATGACCCTGATGATGCAGACTTTGAGCCTGCCACAATTGGCCATGCTGGAAATAAGGATAAAGATTGGGAAGGTGAAGGCTCGGATGAAGATGATGACAGTGATGAAAATATAGTTGTCTCAGATGATGATGAGTCTTTCTATGCAAAACGGCCTAAAGGAAGGCAACGAGGTAAGATTGGACAGAGCATAAAATCTACCAGAGATCGCAAAGCGTATGCTGCATCTGGACGGCAAAGAAGACTTAAATCATCATTTGAGGACAATGAGTCAACAACTGAGGATTCTGACAATGACAGTGACGAGGATTTCAAAAGCTCAAAAAAGCGGGGTGTTCATGCTCGCAAAAATAATGGTCGTTCTTCTTCAGTTACAGGTCTTTCTATGCGCAACAGTGAGGTTCGGACGTCTAGTAGGTCTGTTAGGAAGGTATCATATGTGGAAAGTGAAGAAAGTGAAGAAGTCGATGAAGGGAAAAAGAAAAAGTCCCAAAAGGAAGAAATTGATGAGGAAGATAGTGACTCCATTGAAAAGGTGCTTTGGCATCAACCAAAGGGCACAGCAGAAGATGCCGAAAGGAATAACCGATCAACAGAGCCTGTTTTAATGAGTCACTTGTTTGATTCGGAAATTGATTGGAATGAGATGGAATTTTTGATAAAATGGAAAGGGCAATCACATTTGCACTGTCAATGGAAATCTTTTGCGGAGCTGCAAAACCTCAGTGGTTTTAAGAAGGTTTTGAATTATACAAAGAAAATAATGGAAGACATGAGGTATAGGAGGTCAATCTCAAGAGAGGAGATTGAGGTCAATGATGTTAGTAAGGAGATGGATTTAGATATTATAAAACAGAACAGTCAGGTGGAAAGGATAATTGCAGATAGAATCAGCAAAGATAATTCTGGCGATGTTATTCCAGAATACTTGGTCAAGTGGCATGGACTATCTTATGCTGAAGCGACTTGGGAAAAGGATACTGATATTGCTTTTGCCCAAAATGCTATTGACGAGTATAAGGCTCGTGAGGCTGCTATGGCAGCAGTTCAAGGAAAGATGGTGGATTCTCAGCGTAAGAAAAGTAAAGCAAGTTTGCGGAAGCTTGAGGAACAACCTGAGTGGTTGAAGGGTGGAAAGCTCCGTGATTATCAACTTGAGGGTCTGAACTTTCTTGTTAACAGTTGGAGAAATGATACAAATGTCATTTTAGCTGATGAAATGGGCCTTGGAAAAACTGTTCAGTCAGTCTCGATGCTTGGTTTTCTACAGAATGCCCAGCAAATCCATGGTCCTTTTCTTGTAGTTGTTCCGCTCTCCACTTTATCAAATTGGGCCAAAGAATTCAGGAAGTGGCTTCCTGAAATGAATATTATCATATATGTTGGTACTCGAGCTAGTCGAGAGGTTTGTCAACTGTATGAATTTTATAATGAAAAAAGACCTGGGAAGCCAATAAAATTCAATGCACTTTTGACGACATATGAAGTAGTTTTGAAGGATAAGGCTGTTCTGTCCAAAATCAAATGGAGTTACCTGATGGTGGATGAGGCTCATAGGCTAAAAAATAGTGAGGCACAGTTGTATACGACACTTTCAGAATTTAGCACCAAGAACAAGTTGCTTATCACTGGTACTCCTCTACAGAACAGTGTGGAAGAACTATGGGCCTTACTTCATTTCCTTGATCCTGATAAGTTCAGGAGCAAAGATGAATTTGTTCAAAACTATAAGAATCTGAGTTCTTTTAATGAAAATGAGCTTGCAAATCTTCACACAGAGTTGAGACCTCACATACTTCGAAGAGTTATCAAAGATGTGGAGAAATCATTACCTCCCAAAATTGAGCGTATCCTTCGGGTTGAAATGTCTCCTCTTCAGAAACAGTATTATAAGTGGATTTTGGAACGTAATTTTCACAATTTGAACAAAGGAGTTCGTGGGAATCAGGTTTCTCTTCTAAATATTGTGGTGGAATTAAAGAAGTGCTGCAACCATCCCTTCTTGTTTGAAAGTGCTGATCATGGCTATGGTGGGGATTCCGGGAGTAGTGATAACAGTAAACTAGAGAGAATTGTTTTTAGCAGCGGCAAGCTTGTCATACTTGATAAGCTGCTTGTTAGATTGCATGAAACCAAGCATCGGGTTTTGATTTTCTCTCAGATGGTTAGGATGTTGGATATACTGGGAGAATATATGTCACTTCGAGGATTTCAATTTCAGAGGCTTGATGGCAGTACAAAAGCTGAGCTGCGACAGCAGGCAATGGATCATTTCAATGCACCTGGTAGTGATGATTTTTGCTTCCTTCTTTCAACGCGGGCAGGAGGTTTGGGTATCAACCTTGCCACAGCCGACACTGTTATAATATTTGATTCTGATTGGAATCCTCAAAATGACCTGCAGGCAATGAGTAGAGCTCATAGAATTGGGCAACAAGAAGTTGTTAACATATATAGATTTGTGACAAGTAAAAGTGTTGAGGAAGATATTCTGGAACGTGCTAAGAAGAAAATGGTTCTGGACCACTTGGTGATTCAAAAATTGAATGCAGAGGGTAGATTGGAGAAGAAAGAAGCCAAAAAAGGAGGCAGTTATTTTGACAAAAATGAGCTGTCTGCAATCTTACGATTTGGAGCTGAGGAGCTTTTTAAGGAAGAAAGAAATGATGAAGAAAGCAAGAAACGACTCTTAAGTATGGATATAGATGAAATTCTTGAAAGAGCAGAGAAGGTTGAAGAGAAGGAAGCTGACGGGGAACAGGGAAATGAGTTATTAAGTGCCTTTAAGGTTGCCAATTTTTGCAATGATGAAGATGATGGGAGTTTCTGGAGCCGATGGATAAAACCTGATTCTGTGTTCCAAGCAGAGGAAGCTCTTGCTCCTCGTTCTGCTAGAAATATTAAAAGCTATGCAGAAGTTGATCCATCAGAAAAAACTAATAAAAGAAAAAAGAAGGAAGCTGAACCACCCGAACGAGTTCAGAAACGTCGGAAACCAGATTATTCTGCTCCTGCAGTACCGATGATTGAAGGAGCATGTGTTCAAGTGAGAAATTGGTCATATGGCAATTTATCTAAAAGAGACGCACTTCGTTTTTCTCGTTCTGTTATGAAATATGGCAATGAGAGCCAAATTGACTTAATTGCTGCCGAGGTGGGTGGTGCTGTTGGTGCGGCTCCAACTGGAGCACAGGTTGAACTTTTCAATGCCTTTATTGATGGCTGTACAGAGGCAGTGGAACTTGGAAATTTAGATGTGAAGGGGCCTCTGCTGGATTTTTTTGGTGTCCCTGTGAAGGCAAATGATCTACTTACCCGTGTCCAACAACTTCAACTTTTGGCAAAGCGCATTGATCGATATGATGATCCTATTGCACAATTTCGTGTTCTGTCATATCTCAAACCATCAAACTGGTCCAAAGGTTGTGGATGGAATCAAATTGATGATGCTAGATTGCTTCTTGGAATATATTTCCATGGTTTTGGTAATTGGGAAAAGATAAGATTAGATGAAAGACTTGGCCTCACGAAAAAAATTGCACCAGTAGAACTTCAACACCATGAAACTTTCTTACCACGAGCTCCAAATTTAAAAGACCGTGCTAATGCCCTTTTGGAGCAAGAACTTGCTGTTCTTGGTGTGAAAAACGCCAATAGCAAAGTCGGACGGAAGCCTTCAAAGAAAGAGCGAGATAATATCATCTCATTGGTACGTGGGCAGGAGAAAAAGAAAAAATCAGGTTCTGTTAATGTCCAAATGAGAAAGGAAAGATTTCAAAAACCGCAGAAGGTTGAATCTATAGTAAAGGAAGAGGGTGAAATGTCTGACAACGAGGAAGTATACGAACAGTTTAAGGAGGTGAAATGGATGGAATGGTGTCAAGATGTAATGGTCGAAGAAATGAAGACTTTGAAACGTCTTCACAGGTTGCAGCAAACTAGTGCCAATCTTCCCAAGGAGAAGGTGCTTTCAAAAATACGCAACTATTTGCAACTTCTCGGGCGAAGGATAGATCAAATTGTGTCGGAACATGAAGAGGAGCCCTATAAGCAAGATAGAATGACTGTGCGACTGTGGAAATACGTCTCCACTTTTTCCCATCTTTCAGGGGAAAGGCTTCATCAAATATATTCCAAACTTAGACAGGAGCAAGATGAGGCAGGTGTTGGCCCTTCTCACGGCAATGGATCGGTATCTGCTTCATTTACCAGAAATGGAAACCCATTCCGTCGCCATATGGAGAGGCAAAGAGGATTAAAAAATATGAGTACATATCAAACGCCAGAACCAGTTGATAATAGTGGGAAATCTGAGGCATGGAAACGAAGAAGAAGAGCTGAAAGTGATAATCAATTCCAGGGTCAGCCGCCACCTCAAAGGACCGTAAGTAATGGACTCAGGATTACTGATCCTAACTCACTTGGGATCCTTGGTGCCGGTCCCTCGGATAAACGCTTTGCTAATGAGAAACCTTACAGGACGCAACCTGGTGGATTTCCTTCAAGACAGGGCTTCTCTTCAGGTATAAAGTAA 5283 0.4115 MAFFRNFTNDTVSHGVMEDKSQGQNANRTHRSVGNECTDATSSEKEFDMNMEAQYESEGEPNGSGRLQTEATMDDRDAVKDSNLQTAGSKTATMGRWGSTFWKDCGQMGPQNGSESGQESKSGSDYRNADGSEDNSLDGRAERLDSDDDDGQKEAGKGPRGLSDVPAEEMLSDEYYEQDGEEQSDSLHYGGIKKPSESNSWPQRMSSTANRTLHRNSRFSDDAEEDDDDDGDNDNDGDDADYEEEDEADEDDPDDADFEPATIGHAGNKDKDWEGEGSDEDDDSDENIVVSDDDESFYAKRPKGRQRGKIGQSIKSTRDRKAYAASGRQRRLKSSFEDNESTTEDSDNDSDEDFKSSKKRGVHARKNNGRSSSVTGLSMRNSEVRTSSRSVRKVSYVESEESEEVDEGKKKKSQKEEIDEEDSDSIEKVLWHQPKGTAEDAERNNRSTEPVLMSHLFDSEIDWNEMEFLIKWKGQSHLHCQWKSFAELQNLSGFKKVLNYTKKIMEDMRYRRSISREEIEVNDVSKEMDLDIIKQNSQVERIIADRISKDNSGDVIPEYLVKWHGLSYAEATWEKDTDIAFAQNAIDEYKAREAAMAAVQGKMVDSQRKKSKASLRKLEEQPEWLKGGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIHGPFLVVVPLSTLSNWAKEFRKWLPEMNIIIYVGTRASREVCQLYEFYNEKRPGKPIKFNALLTTYEVVLKDKAVLSKIKWSYLMVDEAHRLKNSEAQLYTTLSEFSTKNKLLITGTPLQNSVEELWALLHFLDPDKFRSKDEFVQNYKNLSSFNENELANLHTELRPHILRRVIKDVEKSLPPKIERILRVEMSPLQKQYYKWILERNFHNLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDSGSSDNSKLERIVFSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILGEYMSLRGFQFQRLDGSTKAELRQQAMDHFNAPGSDDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEDILERAKKKMVLDHLVIQKLNAEGRLEKKEAKKGGSYFDKNELSAILRFGAEELFKEERNDEESKKRLLSMDIDEILERAEKVEEKEADGEQGNELLSAFKVANFCNDEDDGSFWSRWIKPDSVFQAEEALAPRSARNIKSYAEVDPSEKTNKRKKKEAEPPERVQKRRKPDYSAPAVPMIEGACVQVRNWSYGNLSKRDALRFSRSVMKYGNESQIDLIAAEVGGAVGAAPTGAQVELFNAFIDGCTEAVELGNLDVKGPLLDFFGVPVKANDLLTRVQQLQLLAKRIDRYDDPIAQFRVLSYLKPSNWSKGCGWNQIDDARLLLGIYFHGFGNWEKIRLDERLGLTKKIAPVELQHHETFLPRAPNLKDRANALLEQELAVLGVKNANSKVGRKPSKKERDNIISLVRGQEKKKKSGSVNVQMRKERFQKPQKVESIVKEEGEMSDNEEVYEQFKEVKWMEWCQDVMVEEMKTLKRLHRLQQTSANLPKEKVLSKIRNYLQLLGRRIDQIVSEHEEEPYKQDRMTVRLWKYVSTFSHLSGERLHQIYSKLRQEQDEAGVGPSHGNGSVSASFTRNGNPFRRHMERQRGLKNMSTYQTPEPVDNSGKSEAWKRRRRAESDNQFQGQPPPQRTVSNGLRITDPNSLGILGAGPSDKRFANEKPYRTQPGGFPSRQGFSSGIK* 1761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0351 1760 Gene3D - 1357 1472 - -
Vra6g0351 1760 MobiDBLite consensus disorder prediction 1 446 - -
Vra6g0351 1760 MobiDBLite consensus disorder prediction 275 292 - -
Vra6g0351 1760 CDD CD2_tandem 535 591 - -
Vra6g0351 1760 MobiDBLite consensus disorder prediction 1700 1720 - -
Vra6g0351 1760 SMART helicmild6 976 1060 IPR001650 -
Vra6g0351 1760 Gene3D - 861 1091 IPR027417 -
Vra6g0351 1760 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 642 814 IPR014001 -
Vra6g0351 1760 ProSiteProfiles Chromo and chromo shadow domain profile. 537 601 IPR000953 -
Vra6g0351 1760 Gene3D - 409 537 - -
Vra6g0351 1760 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 112 1677 - -
Vra6g0351 1760 MobiDBLite consensus disorder prediction 105 125 - -
Vra6g0351 1760 Pfam Helicase conserved C-terminal domain 947 1060 IPR001650 -
Vra6g0351 1760 MobiDBLite consensus disorder prediction 126 157 - -
Vra6g0351 1760 SMART DUF4208_2 1525 1630 IPR025260 -
Vra6g0351 1760 MobiDBLite consensus disorder prediction 367 393 - -
Vra6g0351 1760 MobiDBLite consensus disorder prediction 312 340 - -
Vra6g0351 1760 Coils Coil 1144 1164 - -
Vra6g0351 1760 MobiDBLite consensus disorder prediction 1685 1699 - -
Vra6g0351 1760 MobiDBLite consensus disorder prediction 1669 1683 - -
Vra6g0351 1760 MobiDBLite consensus disorder prediction 1219 1250 - -
Vra6g0351 1760 MobiDBLite consensus disorder prediction 82 96 - -
Vra6g0351 1760 MobiDBLite consensus disorder prediction 1 40 - -
Vra6g0351 1760 SUPERFAMILY Chromo domain-like 516 592 IPR016197 -
Vra6g0351 1760 MobiDBLite consensus disorder prediction 196 214 - -
Vra6g0351 1760 ProSiteProfiles Chromo and chromo shadow domain profile. 424 512 IPR000953 -
Vra6g0351 1760 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1 112 1677 - -
Vra6g0351 1760 MobiDBLite consensus disorder prediction 1221 1249 - -
Vra6g0351 1760 MobiDBLite consensus disorder prediction 1634 1760 - -
Vra6g0351 1760 Pfam SNF2-related domain 649 918 IPR000330 GO:0005524|GO:0140658
Vra6g0351 1760 Pfam Domain of unknown function (DUF4208) 1537 1629 IPR025260 -
Vra6g0351 1760 Coils Coil 1090 1110 - -
Vra6g0351 1760 CDD SF2_C_SNF 936 1071 - -
Vra6g0351 1760 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 950 1101 IPR001650 -
Vra6g0351 1760 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 854 1136 IPR027417 -
Vra6g0351 1760 SMART ultradead3 626 826 IPR014001 -
Vra6g0351 1760 Gene3D - 621 860 IPR038718 -
Vra6g0351 1760 SUPERFAMILY Chromo domain-like 420 504 IPR016197 -
Vra6g0351 1760 Gene3D - 539 591 - -
Vra6g0351 1760 MobiDBLite consensus disorder prediction 222 257 - -
Vra6g0351 1760 Pfam Chromo (CHRromatin Organisation MOdifier) domain 538 592 IPR023780 -
Vra6g0351 1760 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 760 769 IPR002464 -
Vra6g0351 1760 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 617 851 IPR027417 -
Vra6g0351 1760 CDD CD1_tandem 422 502 - -
Vra6g0351 1760 MobiDBLite consensus disorder prediction 394 446 - -
Vra6g0351 1760 SMART chromo_7 535 594 IPR000953 -
Vra6g0351 1760 SMART chromo_7 423 505 IPR000953 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0351 Vra-Chr6 2642216 2661023 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0351 652 1087 RAD5 or RAD16-like Gene Family AT1G02670 25.595 1.60e-33 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vra6g0351 SNF2_N 1.4e-64 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0351 K11367 - gmx:100792398 3061.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0351 6 2642216 2661023 Vra6g0351 6 2642216 2661023 ECH