Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0350 ATGGGAACTTCAACTCTTGGCCTTGTACTTGTACCACTTCTTTTGTGCTTTGCTTCTGTTTCCTCTCTTCCCATGTCTCTGAGAAGGCAAGCCTCTATCTTGGTTTCCCTCAAACAAGATTTTGAGGCTAACACTGATTCTCTCAGAAGCTGGGACATGACTAATAGTGTGTCCCTTTGCACTTGGGAGGGCATTGAGTGTGACCAAAAGAATAGGTCAGTGGTGTCATTGGACATAGCCAACCTCAACCTTTCTGGCACACTTTCACCTTCCATCACAGCACTCAGGAGCCTTGAGAGTGTATCACTTGCTGGGAATGGCTTCTCAGGAGGGTTCCCTAGTGATATTCACAAGCTGGCAGGGCTGAGATTCCTCAACATATCCGCCAACAAGTTCGGTGGAGACATGAATTGGGAGTTCTCTATGTTGAAAGAGCTTGAGGTGCTGGATGCTTATGACAACGAGTTCAACTGCTCCCTTCCTCTTGGTGTCACTCGGCTCCCCAAGCTCAATACCTTGAATTTTGGCGGGAATTTTTTCTATGGTGAGATCCCTCCAAGCTATGGAGACATGGTTCAGCTCAACTTTCTGTCTCTTGCCGGGAATGATTTGAGGGGTGTCATACCATCTGAGCTAGGGAATCTCACTAATCTGACACAGCTTTTCTTGGGATACTACAATCAGTTTGATGGTGGAATCCCTCCTCAGTTTGGTAAGTTGGTTAATTTGACTCATCTTGACCTTGCAAGCTGTGGTTTGACAGGTCCAATTCCGGCTGAGTTGGGAAATCTCAACAAATTAGACACTCTCTTTTTGCAAACTAACCAGCTCAGTGGCTCAATCCCTCCCCAACTAGGCAACATGAGTGGCATGAAATGTCTTGATCTGTCAAACAATGAGCTAACAGGAGACATCCCCAATGAGTTTTCAGGCCTTCACCAACTCACCCTCTTGAACTTGTTCATCAACAGGTTGCATGGTGAAATTCCACCTTTCATTGCGGAGCTGCCTAACTTGGAAGTGCTGAAGCTTTGGCAGAACAACTTCACAGGGGCAATTCCCCCAAGACTTGGCCAAAATGGTAAACTGGTTGAGCTTGACCTGTCAACAAACAAGCTCACTGGATTGGTGCCTAAATCTCTTTGCCTTGGGAGGAGGCTGAGGATTTTGATTCTGCTCAACAATTTTCTCTTTGGATCTTTGCCGGCTGATATTGGCCAATGCTACACACTACAGAGAGTTCGTTTGGGACAGAACTATTTGACAGGGTCAATACCAAATGGTTTTCTGCACTTGCCTGAGTTAGATCTTTTAGAATTGCAGAACAATTACCTCAGTGGTTGGCTTCCACAGGAGACAAACACTGCACCCTCTAAACTTGGACAATTGAATCTATCAAACAATCGCCTAACCGGGTCTCTGCCAACCTCTATTGGAAACTTTCCCAACTTGCAAATTCTGCTGCTTCACGGAAATAGACTCTCAGGAGAAATTCCTCCAGATATAGGGAGGTTAAAAAATATCCTCAAGTTGGATTTAAGTGTCAACAACTTCTCAGGCACCATCCCTCCAGAGATAGGTAACTGTTTGTTGCTCACCTATTTAGATTTGAGCCAAAACCAACTATCAGGTCCTATCCCAGTTCAGCTTTCTCAAATTCACATAATGAACTATCTCAATGTCTCATGGAACCACCTAAACCAAAATCTTCCCAAGGAACTTGGGGCCATGAAGGGCTTGACTTCAGCAGATTTTTCTCACAATGACTTCTCTGGTTCAATACCTGAGGAGGGGCAATTTTCAGTGTTTAACTCTACATCCTTTATTGGGAACCCTCGACTGTGTGGATATGAAATGAATCCATGTAAACATTCTTCAAATTCAGTATTGGAGTCCCAAGACAGTAGCAGCACGAAGCCTGGTGTTCCTGGGAAGTATAAGCTTCTTTTTGCAGTGGCACTGTTGGCTTGTTCGTTAGCATTTGCAACCTTGGCCTTTATCAAGAGCAGGAAGCAAAGGAGGCACTCCAATTCATGGAAGCTCACAACATTTCAGAAACTGGAATATGGAAGTGAAGACATCATAGGGTGCATAAAGGAAAGCAATGTCATAGGAAGAGGAGGAGCTGGGGTTGTGTACCATGGAACCATGCCAAATGGGGAGCAAGTAGCTGTGAAGAAGCTGTTAGGAATCAACAAAGGATGTTCTCATGATAATGGTCTCTCTGCAGAAATAAGGACACTAGGCAGAATCAGGCACAGGTACATTGTGAGGTTGCTGGCCTTTTGCTCAAATAGAGAGACCAATTTGCTTGTTTATGAGTACATGCCAAATGGAAGCTTGGGAGAGGTTTTGCATGGGAAAAGGGGAGAGTTTCTCAAGTGGGATACCAGGCTGAAAATAGCAACAGAAGCTGCAAAAGGACTTTGTTATTTGCACCATGATTGTTCCCCTCTGATAATCCACAGAGATGTGAAGTCAAACAACATACTATTGAACTCTGAATTTGAGGCTCATGTTGCTGATTTTGGACTTGCCAAGTTCTTGCAAGATACTGGGACATCAGAGTGCATGTCATCCATTGCTGGTTCTTACGGTTACATAGCTCCAGAATATGCATACACGTTGAAAGTTGATGAGAAAAGTGATGTCTACAGCTTTGGAGTGGTGTTGCTAGAACTACTGACTGGTAGAAAGCCAGTGGGGAATTTTGGGGAAGAAGGAGTAGACATTGTTCAGTGGACCAAGTTGCAAACAAATTGGAGCAAAGAGAAAGTGGTGAAGATTCTTGATGAAAGGCTATGTCAGATTCCCTTAGATGAAGCAAAGCAGGTATACTTTGTGGCCATGTTATGTGTTCAGGAACAAAGCGTGGAGCGACCAACAATGAGGGAAGTTGTTGAAATGCTTGCACAAGCAAAGCAACCAAACACATTCCAAAAGCAGTGA 2949 0.4432 MGTSTLGLVLVPLLLCFASVSSLPMSLRRQASILVSLKQDFEANTDSLRSWDMTNSVSLCTWEGIECDQKNRSVVSLDIANLNLSGTLSPSITALRSLESVSLAGNGFSGGFPSDIHKLAGLRFLNISANKFGGDMNWEFSMLKELEVLDAYDNEFNCSLPLGVTRLPKLNTLNFGGNFFYGEIPPSYGDMVQLNFLSLAGNDLRGVIPSELGNLTNLTQLFLGYYNQFDGGIPPQFGKLVNLTHLDLASCGLTGPIPAELGNLNKLDTLFLQTNQLSGSIPPQLGNMSGMKCLDLSNNELTGDIPNEFSGLHQLTLLNLFINRLHGEIPPFIAELPNLEVLKLWQNNFTGAIPPRLGQNGKLVELDLSTNKLTGLVPKSLCLGRRLRILILLNNFLFGSLPADIGQCYTLQRVRLGQNYLTGSIPNGFLHLPELDLLELQNNYLSGWLPQETNTAPSKLGQLNLSNNRLTGSLPTSIGNFPNLQILLLHGNRLSGEIPPDIGRLKNILKLDLSVNNFSGTIPPEIGNCLLLTYLDLSQNQLSGPIPVQLSQIHIMNYLNVSWNHLNQNLPKELGAMKGLTSADFSHNDFSGSIPEEGQFSVFNSTSFIGNPRLCGYEMNPCKHSSNSVLESQDSSSTKPGVPGKYKLLFAVALLACSLAFATLAFIKSRKQRRHSNSWKLTTFQKLEYGSEDIIGCIKESNVIGRGGAGVVYHGTMPNGEQVAVKKLLGINKGCSHDNGLSAEIRTLGRIRHRYIVRLLAFCSNRETNLLVYEYMPNGSLGEVLHGKRGEFLKWDTRLKIATEAAKGLCYLHHDCSPLIIHRDVKSNNILLNSEFEAHVADFGLAKFLQDTGTSECMSSIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELLTGRKPVGNFGEEGVDIVQWTKLQTNWSKEKVVKILDERLCQIPLDEAKQVYFVAMLCVQEQSVERPTMREVVEMLAQAKQPNTFQKQ* 983
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0350 982 Pfam Protein tyrosine and serine/threonine kinase 700 970 IPR001245 GO:0004672|GO:0006468
Vra6g0350 982 Gene3D Ribonuclease Inhibitor 29 138 IPR032675 -
Vra6g0350 982 Pfam Leucine rich repeat N-terminal domain 30 68 IPR013210 -
Vra6g0350 982 SMART serkin_6 698 970 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g0350 982 SUPERFAMILY L domain-like 43 378 - -
Vra6g0350 982 Gene3D Ribonuclease Inhibitor 139 230 IPR032675 -
Vra6g0350 982 Gene3D Ribonuclease Inhibitor 231 332 IPR032675 -
Vra6g0350 982 Pfam Leucine Rich Repeat 292 312 IPR001611 GO:0005515
Vra6g0350 982 Pfam Leucine Rich Repeat 242 264 IPR001611 GO:0005515
Vra6g0350 982 ProSiteProfiles Protein kinase domain profile. 698 978 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g0350 982 SMART LRR_typ_2 481 505 IPR003591 -
Vra6g0350 982 SMART LRR_typ_2 432 456 IPR003591 -
Vra6g0350 982 SMART LRR_typ_2 336 360 IPR003591 -
Vra6g0350 982 SMART LRR_typ_2 240 264 IPR003591 -
Vra6g0350 982 SMART LRR_typ_2 288 311 IPR003591 -
Vra6g0350 982 SMART LRR_typ_2 361 383 IPR003591 -
Vra6g0350 982 SMART LRR_typ_2 191 215 IPR003591 -
Vra6g0350 982 Gene3D Transferase(Phosphotransferase) domain 1 776 982 - -
Vra6g0350 982 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE BAM3 10 979 - -
Vra6g0350 982 PANTHER UNNAMED PRODUCT 10 979 - -
Vra6g0350 982 SUPERFAMILY L domain-like 305 627 - -
Vra6g0350 982 SUPERFAMILY Protein kinase-like (PK-like) 692 970 IPR011009 -
Vra6g0350 982 Gene3D Phosphorylase Kinase; domain 1 666 775 - -
Vra6g0350 982 ProSitePatterns Serine/Threonine protein kinases active-site signature. 820 832 IPR008271 GO:0004672|GO:0006468
Vra6g0350 982 Gene3D Ribonuclease Inhibitor 336 629 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0350 Vra-Chr6 2622523 2627179 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0350 20 972 Receptor kinase-like Gene Family AT5G65700 57.785 0.0 1097
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vra6g0350 PK_Tyr_Ser-Thr 1.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0350 - - gmx:100816158 1808.88