Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0334 ATGAAGCTTTCTTCTTCTGGATTTAATCCACCGGGGGAGGAAGAAGGGGAGAAAAAATGTTTGAATTCTGAGCTTTGGCATGCATGTGCTGGCCCTCTGGTTTCTCTGCCTCCTGTTGGAAGTCGTGTAGTCTACTTTCCCCAAGGTCACAGTGAGCAGGTTGCTGCTTCAACCAACAGGGAAGTAGATGCACATATTCCTAATTACCCTAACTTGCCACCGCAGCTTATCTGTCAGCTTCACAATGTAACAATGCATGCGGATGCTGAAACTGATGAAGTATATGCACAAATGACTCTGCAACCTCTAAGTCCACAAGAGCAAAAGGAGGTGTATCTTATGCCTGCTGAATTGGGCACTCCCAGCAAGCAACCAACCAATTACTTCTGCAAAACATTAACTGCAAGTGATACCAGCACTCATGGAGGATTTTCTGTTCCTCGTAGAGCAGCTGAAAAAGTCTTCCCTCCTCTAGATTACTCACAGCAGCCTCCTGCTCAAGAGCTAATTGCCAGAGATCTTCATGATAATGAATGGAAGTTTAGACACATATTTCGAGGTCAGCCCAAAAGGCATCTTCTTACTACTGGTTGGAGTGTCTTTGTCAGTGCCAAGAGGCTTGTTGCGGGTGATTCAGTCCTTTTCATCTGGAATGAAAAAAATCAATTACTCTTGGGCATACGGCGAGCAAATCGTCCACAGACTATCATGCCATCATCAGTTCTGTCAAGTGATAGCATGCACATTGGTCTTCTTGCTGCAGCAGCTCATGCTGCTGCTACAAACAGCCGCTTTACTATATTCTATAATCCTAGGGCAAGTCCATCTGAATTTGTCATTCCTTTGGCCAAGTATGTTAAAGCAGTATATCATACACGAGTTTCTGTTGGGATGCGGTTTAGGATGCTGTTTGAGACGGAAGAATCAAGTGTTCGTCGATACATGGGTACCATAACTGGTATTAGTGATTTAGATCCTGTCCGCTGGCCAAATTCACACTGGCGTTCTGTGAAGGTTGGCTGGGATGAGTCCACTGCAGGGGAGAGGCAGCCAAGAGTTTCCTTGTGGGAGATTGAACCTTTGACAACATTCCCAATGTATCCATCTCCATTCCCCTTAAGGTTGAGGCGTCCTTGGCCAACGGGCCTACCATCTTTGTATGGTCTCAAAGATGGAGACATGGGCATTGGTTCTCCATTCATGTGGCTCCAAGGTGGACTTGGGGACCAAGGAATGCAATCTTTAAATTTCCAGGGGCTTGGTGTTACACCATGGATGCAACCTAAACTTGACTCTTCTATGCCAGGTCTTCAACCAGAGTTATACCAAGCAATGGCTTCTTCTGCGTTCCAGGAAATGAGAGCAATGGATCCCTCAAAATCTTCCCAACCTCTGTTGCAGTTTCAGCAGACTTCAAATGTTCCCAGTGCTCATACCTCTGAAGTACAGAGGCAAGTATTACCACAGTCTCAGCCTCAAAGCACCCTTCTACAAAATTTTCAAGAAAACCAAGTGCCTGCTCAGTCACAACTTCTGCAACAGCAGTTGCATCGCTACCATCCATATGGTGATCAGCGGCAACAGCAGCAGCAACTTAAAAATTTGCCTCTTCAGCAGCAGTTACCAAATGTCATCTCTCCCTTGTCTAATTTTGCATCAGGTACCCAGTCTCAATCTCCTCCCATGCAAGCTCTTGCTACGCATTGCCAGCAGCAGAGCTTTCCTGAACCTATCAGGAATCATATATCTGGTTCTGATGTTTCCCCTATCCAGAGTCTACTAGGAACGTTCTCCCATGATGGAACATCCCAGTTACTTAACTTGAGTGGATCCAATTCCATTATATCTTCTGCATCCATCCTACCCAAGCAAATGACAGTTGAACCTCAGCTTCCCTCTGCTGCTGCTCAGTGTGTGTTGCCTCAGGTGGAAAACTTGGGAACATCGCAGTCAAATGTGTCTGAACTTGCTGCTTTGCCTCCCTTTCCTGGAAGAGAACATTCGGCATACCATGGTGCTGCTGATCCTCAGAGCAATCTTTTATTTGGGATTAACATTGATCCCTCTTCTCTTATGCTGCAAAATGGCATGTCAAACCTGAGAAATATGGGCAGTGTGAATGATTCATTATCATTGCCATTTTCTGCTTCAAATTGTGGTGGTACCACAAGCACTGATTTTCCCCTAAGTTCAAACATGACAACTTCAAGTTGTGTGGATGAATCAGGCTTCTTGCAGTCTTCTGAAAATGTAGACCAAGCAAACACACCGACTGGAACCTTTGTTAAGGTTCACAAGTCAGGGTCCTTTGGCAGGTCACTGGACATTTCTAAGTTCAGCAGCTATGATGAGCTGCGTAGTGAGCTTGCTCGCATGTTTGGCCTTGAAGGCCAACTAGAGGACCCTAAGACTCAGAGATCAGGCTGGCAGCTTGTATTTGTTGACCGGGAGAATGATATTCTTCTTCTTGGTGATGATCCTTGGCAGGAGTTTGTGAACAATGTGTGGTACATAAAAATCCTATCACCACTAGAACTGCAGCAAATGGGCAAAGGTGTCAGTCCTTCTACTTCTGCTCCAGGTCACAAACTTTCTACCTCTGGCAACTCTTGTGATAATTATGCAAGTCAACAGGAGTTGAGAAGTTCCAGAAATGGCATGGCATCAATGGGGTCTTTTCACTACTANGACATTCTCCCGTGTAAGGAATGTTAG 2715 0.4538 MKLSSSGFNPPGEEEGEKKCLNSELWHACAGPLVSLPPVGSRVVYFPQGHSEQVAASTNREVDAHIPNYPNLPPQLICQLHNVTMHADAETDEVYAQMTLQPLSPQEQKEVYLMPAELGTPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDYSQQPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTIMPSSVLSSDSMHIGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLRRPWPTGLPSLYGLKDGDMGIGSPFMWLQGGLGDQGMQSLNFQGLGVTPWMQPKLDSSMPGLQPELYQAMASSAFQEMRAMDPSKSSQPLLQFQQTSNVPSAHTSEVQRQVLPQSQPQSTLLQNFQENQVPAQSQLLQQQLHRYHPYGDQRQQQQQLKNLPLQQQLPNVISPLSNFASGTQSQSPPMQALATHCQQQSFPEPIRNHISGSDVSPIQSLLGTFSHDGTSQLLNLSGSNSIISSASILPKQMTVEPQLPSAAAQCVLPQVENLGTSQSNVSELAALPPFPGREHSAYHGAADPQSNLLFGINIDPSSLMLQNGMSNLRNMGSVNDSLSLPFSASNCGGTTSTDFPLSSNMTTSSCVDESGFLQSSENVDQANTPTGTFVKVHKSGSFGRSLDISKFSSYDELRSELARMFGLEGQLEDPKTQRSGWQLVFVDRENDILLLGDDPWQEFVNNVWYIKILSPLELQQMGKGVSPSTSAPGHKLSTSGNSCDNYASQQELRSSRNGMASMGSFHYXDILPCKEC* 905
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0334 904 MobiDBLite consensus disorder prediction 454 502 - -
Vra6g0334 904 SUPERFAMILY CAD & PB1 domains 752 835 - -
Vra6g0334 904 Pfam AUX/IAA family 748 845 IPR033389 -
Vra6g0334 904 Gene3D - 127 230 IPR015300 -
Vra6g0334 904 CDD B3_DNA 128 229 IPR003340 GO:0003677
Vra6g0334 904 Gene3D - 293 365 - -
Vra6g0334 904 SUPERFAMILY DNA-binding pseudobarrel domain 114 258 IPR015300 -
Vra6g0334 904 ProSiteProfiles PB1 domain profile. 759 851 IPR000270 GO:0005515
Vra6g0334 904 Pfam Auxin response factor 255 338 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vra6g0334 904 Pfam B3 DNA binding domain 129 230 IPR003340 GO:0003677
Vra6g0334 904 Gene3D - 755 850 - -
Vra6g0334 904 MobiDBLite consensus disorder prediction 850 878 - -
Vra6g0334 904 PANTHER AUXIN RESPONSE FACTOR 6 1 872 - -
Vra6g0334 904 SMART B3_2 129 231 IPR003340 GO:0003677
Vra6g0334 904 ProSiteProfiles B3 DNA-binding domain profile. 129 231 IPR003340 GO:0003677
Vra6g0334 904 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 872 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vra6g0334 904 MobiDBLite consensus disorder prediction 453 502 - -
Vra6g0334 904 MobiDBLite consensus disorder prediction 516 582 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0334 Vra-Chr6 2516233 2537621 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0334 98 850 B3 DNA Binding Superfamily AT5G37020 56.053 0.0 696
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vra6g0334 AUX_IAA 9.4e-09 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0334 - - gmx:100810798 1649.03