Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0329 ATGAAGAACACTATCTCAGGTTGGGATTTTGAGAGTGATACATGTCTCACCAGCCAGAGAAAGCCCACAGGGCTGGACCATGAACTTGTAGAACTCCTATGGCAAAATGGGCAAGTAGTTATGCACAGCCAAACAAATAGGAAGCTACCTGGGAATTCATCTAACTTGAGACAGCTGCCGAAAACTACTCAATCAAACAACTTGGATCAAGAAGAGGCAGCTCCATGGATCCAATACCCACTTGATGACCCTTTAGAACAAGAGTTTTGTTCAAACCTTTTATCTGAGCTACCACCACCTTGTGAAGTTGAATCTTATTACAAGCAAATCAGAGAATTGGAAGAGGAAAAGTTTGCCAATATTTTCTCCCCTGGTGCCCGCCATCATCCTCCTTCACCTTCACAACTCCTACCATCTATCATGAAATCCTCCTGTGCTCAGGGACTCCAAGAGAATCTCATGTCTGCTCCAGGATTTCATGTTCCTGATTCATCTCAGAAAATCAATGACTTTGGTGCATCACGGAAGGTGCTAAATTTTCCTCACTTTTCAGCACCCCGTAATGTCTCTTCACCATCTCAAAAAACTGCAGTTAACCTGTCACAAAGTGAAGCTAGAGAGCACTCAGTGATCACGGTTGGTTCAAGTCACTGTGGCAGCAATCACATCCCTCAGGACCAAGATGTAAACCGGGTTTCAAGCAGTGGCGTTTGGGCCACCACTAATAATGCTACTTTATCAGCTGAGCCAGAAGCTATAGATTGTATCCATAGAAGTGAGAGAGGAAAATCAGAGATGATTGAACCAACTGTGGCTTCATCTTCCGGTGGCTCAGGTAGTACTGGTATAGGAAGAACTTGTTCTCAATCAACAAGAGGACATGGCCAAAAGAGAAAAGGGACTGAAGAAGAAGCACTAGAGGAGCAAAGTGAGGCCACAGAACTTAAATCAGCAGATGGAAACAAGTTATCTCAGCGTTCCAGAAGAAACCGTGCAGCCGAAGTGCATAATCTATCCGAAAGGAGAAGAAGAGATAGGATTAACGACAAGATGAGAGCATTACAGCAACTGATACCAAACAGTAACAAGACAGACAAAGCATCAATGTTAGAAGAGGCAATCGAATACTTAAAATCACTTCAGTTTCAGCTTCAGGTAATGTGCATGGGGGCTGGCATGACACCAGTTATGTTTCCAGGAATTCAGCACTATATGTCACAGATGGGAATGGGAATTGGTGGACCTTCTTTGCCTTCCATTCACAACCCAATGCAATTACCAAAAGTGGGTCAAGCCATGTCTGTCACTCAGCCTCAGCCTCAGATGCCAAACCACAATTTACTGTGCCAAAATCCAGTTCTGGGTGCCTTCAATTACCAAAATCAGATGCAAAACCAATGCCTTTCAGAACAATATGCACGTTATATGGGCTACCATCTCATGAATAGTGCCTCTCAGCCAATGAACGCCTTGAGATATGGTTCCCAAGCAATGCAACACAGTGAAATAATGATTGCAGGAAGCAATAATAGCAGCGGACCCATGAGTGGAACACCTAATATAGCTAATGTTAATGATGCTGTTAGTGGCAAAACTGGCTCTTCCACCTTTGACTGA 1617 0.4378 MKNTISGWDFESDTCLTSQRKPTGLDHELVELLWQNGQVVMHSQTNRKLPGNSSNLRQLPKTTQSNNLDQEEAAPWIQYPLDDPLEQEFCSNLLSELPPPCEVESYYKQIRELEEEKFANIFSPGARHHPPSPSQLLPSIMKSSCAQGLQENLMSAPGFHVPDSSQKINDFGASRKVLNFPHFSAPRNVSSPSQKTAVNLSQSEAREHSVITVGSSHCGSNHIPQDQDVNRVSSSGVWATTNNATLSAEPEAIDCIHRSERGKSEMIEPTVASSSGGSGSTGIGRTCSQSTRGHGQKRKGTEEEALEEQSEATELKSADGNKLSQRSRRNRAAEVHNLSERRRRDRINDKMRALQQLIPNSNKTDKASMLEEAIEYLKSLQFQLQVMCMGAGMTPVMFPGIQHYMSQMGMGIGGPSLPSIHNPMQLPKVGQAMSVTQPQPQMPNHNLLCQNPVLGAFNYQNQMQNQCLSEQYARYMGYHLMNSASQPMNALRYGSQAMQHSEIMIAGSNNSSGPMSGTPNIANVNDAVSGKTGSSTFD* 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0329 538 MobiDBLite consensus disorder prediction 44 72 - -
Vra6g0329 538 SMART finulus 337 386 IPR011598 GO:0046983
Vra6g0329 538 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 331 380 IPR011598 GO:0046983
Vra6g0329 538 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 4 511 IPR031066 -
Vra6g0329 538 MobiDBLite consensus disorder prediction 259 347 - -
Vra6g0329 538 MobiDBLite consensus disorder prediction 44 73 - -
Vra6g0329 538 Pfam Helix-loop-helix DNA-binding domain 335 381 IPR011598 GO:0046983
Vra6g0329 538 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 328 393 IPR036638 GO:0046983
Vra6g0329 538 MobiDBLite consensus disorder prediction 509 538 - -
Vra6g0329 538 PANTHER TRANSCRIPTION FACTOR PIF5 4 511 - -
Vra6g0329 538 MobiDBLite consensus disorder prediction 268 294 - -
Vra6g0329 538 MobiDBLite consensus disorder prediction 295 347 - -
Vra6g0329 538 Gene3D - 326 387 IPR036638 GO:0046983
Vra6g0329 538 CDD bHLH_AtPIF_like 331 394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0329 Vra-Chr6 2482787 2487514 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0329 7 502 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G43010 33.204 1.39e-50 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vra6g0329 HLH 2.5e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0329 K16189 - gmx:100811777 762.296
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0329 6 2482787 2487514 Vra6g0329 6 2482787 2487514 ECH
Vra6g0329 6 2482787 2487514 Vra6g0329 6 2482787 2487514 PCT
Vra6g0320 6 2384856 2388561 Vra6g0329 6 2482787 2487514 PCT