Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0317 ATGGGGTGTGTCGGTTTCAGCTACGATGTGTTCATCAGTTTTAGAGGCGAAGATACTAGGGACAATTTTGTAGGACATCTACGTAAAGAGTTGGGTAGGAGGGGAATACTCACTTTCCATGATGACAGGGATATGGGGATAGGGGAAAGTCTTTCACCTGCTCTCAACAACGCCATGGAAGAATCTAGGATTTTCATCGTTGTGTTTTCTGAGAACTATGCATCTTCCACATGGTGTCTGGATGAACTTGTTAGGATCATGGAGCTCTCCAAGATGAGGGAGAAGAAGCAGGTTGTTTTCCCAGTGTTCTACCATGTACATCCATCAGATATACTGCAAGACAGAAATAGCTTCGGAAAACACATGAGGGCACATGAAAATACGTTTGGAAAACAGTCGCAGAGAATGCAGGCTTGGAGGTCTGCTTTGTCTCAAGCAGTTCACTTGCCAAGGAAGCATATTACCACCGGGTGTGAAAACAATTTTATTGAAGAAATTGTTGGGGAGGTATATAAGAATATAGCTCCTAAACCTTTATACATTGGTCAGAAGCCTCTCGGACTTGAGCCCCACATAGAAGAGGTTATGTCACTTTTGGACATGAAGCCTGATGACAAAACTGTAAGGATGTTGGGCATATATGGACTTGGTGGAATTGGAAAAACGGAACTTGCCAAAGCTTTGTATGACAAAGTTGTGCAACACTTTGATGCTGCAAGTTTTCTTGCCGGTGTTAGAGAAAAATCAAACACAATCAATGGCATGGAAGATCTACAGAAGACACTTTTATCTGAGATGTTAGAGGAGTCGGACACTAAGTTGGGAAGTACCAATAAAGGAATTTATGAAATAAAACGAAAGCTTCGCCGAAAGAAAGTTCTTTTGGTTCTTGACGACGTTGATGATAAAGAAGAGTTAGAGAAGTTGGCAGGAGGGTGTGATTGGTTTGGTCCAGGTAGTAGGATTATTATAACGACAAGGGAAAAAGATGTCCTAATTGCTCACCATGTTGGACATATTTATGAAATGAAGGAACTTGATGAACAACATTCTTTGGAGCTCTTTTGTTGGAATGCCTTCGGACAAGGTTGTCCTAAAACTGGTTTTGAAGATGTGTCTATGCGTGCTGTAAATTACGCTAAAGGTCTTCCACTGGCTTTAAAAGTGATAGGCTCTGACTTAGCTACTCTTCATGAAGAAAGTTTAGATGCCTGGGAAGATGCATTGGAAGAATATGAGAAGACTCCTCCAAATAAAAAGATTCAAGATGTGCTTAAAATAAGCTACGATAGATTGGATGATGATGCCAAACAAGTTTTCTTGGACATAGCTTGCTTCTTTAAAGGGGAGAGAATGAAATATGTGAAAAAGATACTTAAGGAATTTTGTTCAACATCCAACATGAAAGTACTTGTCAATAAATCACTCATAACTATNGAGAATGACAGGCTGAAGATGCATGATCTAATACAAGATATGGGTAGACAGATTGTTAGGCATGAAGCAACAAATCCTGGTGAACGTAGCAGAATATGGGATTATGAAGATGTTATCGAAATACTAAACGAAGATTGTGGAAGTGATAAGATTCAAGGGATTATGCTTGATCCTCCTCAGCAAGAAAAGGTAAAATGGAGTGGTACTGAGTTTCAGAAAATGAAATGCCTCAGAATTCTCATTGTTCGAAACACATCCTTTTCATCTGAACTTCAACATTTACCAAATCATTTAAGACTGCTTGACTGGGACAACTATCCTTCAAAGACTTTCCCACCAAAATTTCATCCAAAGAAAATCGTTGTCTTCAATTTGCCTAGAAGTTGTCTAACATTGGAAGAGCCATTCAAGAAATTTCCATGCTTGACTAATATGGACTTTTCATATAACCAACGTATCATTGAAATACCTGATGTGTCCGAACTTCAGAATCTAACAGAACTGAGACTTGATCATTGTGGAAACCTAATTGCAGTCCATGAATCTGTTGGATTTTTGGAAAGGCTTTCTCATTTAAGTGTTTCAGAATGCAAAAAACTTCAAATTTTCATGTCCAGAATGTTTCTACCATCTCTACAAATCTTCAATCTTAACTTTTGTGAAAGCCTTGGTCACTTCCCAGAGATAATGAAAGAAATGACAAAGCCATTGAAGATTCATATGATAAATACTGCTATTCAAGAGCTTCCAGAATCCATTAGTAAACTTACTGGGCTTGTTTCCATAGACATATCGAATAACAGGGAACTTAAATATCTACCGAGGAGCTTATTCATGTTGCCAAACGTTGATTCTTTCATAATCAAAGCATGTTCCAAACTTGGAGAATCCATCAGAAGTTTGTTGCAACACCCTTCAAAAGCCAATGTTCATCAAAAATTACGATTACTGAATTTCAAAAATGGTAACTTGTCTGATAAAGATCTTCTTGCAATTATTTGTTACTTTCCAAAATTAGAAGAATTGATTGTTTCAGAGAACAATTTTGTATCCATCCCTTCATGCATCAAGGAATGTGGTGACTTGACAAGTCTCGATTTGAATGGATGTAAGAAGCTTAAAAAAATTCCTGAACTCACTAGCTTGAGAATTCTTGATGTTCATCATTGTCTATACCTCGAAGAAATTTCAGAGTTGCCGCCTACAGTTCAGAAAATAGATGCAAGATTTTGTTTCAATTTAACAAAAGAGACATCAGACATGTTATGGTGTCAGGTGAAGAAAGGGGTGGGAGGAATAGAAATGGTGATGCCATTTTTAACTGAGATTCCAGAATGGTTTAACTTTGTGGGGGTGGGAAGGATTCCCAGTTTCTGGGTTCGTGGCAAGTTCCCTAAGATGGTTGTAGCCATGATCTTCCACTTCCAAAATGAGAGTCAAAGGGACAAATTTGATGGTCGTGGGCTTGTTGATCTGCGTTTACTCATCAACGGTCGATATGCTCCTCGTAAAGGGTATCGGAACTTTAGAATTGAGGCAGAGCACATCTTGTTGTGTGATGTAGGAGTTTTGTGCAGTGAGAAGGAGTGGGTTGGCAATGCAGTTATGGAGCATGAGTGGAATCTGGTGCAGGTTTCGTATGATGCGACGTCGTCGTTGATGATAAGTGGTTGGGGAGCCTTTGTGTTTGAAGAAGGAACGAATATGGAAGATCTTCTGTTCGCTAGTCCCAATAACTTGATTGTGAACGGAGATTCAACCTCTGTCCATAAGGGAAGTTTGGAGGACGACGAAGACTACGTTCCTCTTCCGGAAGGAATAGCATGGGAATTCTTGTTTGAAGGAATAAAGGATGGAATTGTTGAGGCATGGAATAAATTTCCTTCTATGGATGTTGCTGAAATCTCTGTGGCTGCCTTGAAGAAGAATTGTAAGATTGAATGGACAGTTGAAGGGATGGAGGGAATACCTTCAGCTGAAAATAGGACGTACATGACTGGACTTTACGGTGTACTCTTGGAAGCAAAACTCAGATTTCCTGATTTGGACGTTGGGGCAGCACTAACTACTGTGGCAAATAGGAAAGGGATTAAAGGAACTTTCAAATCACCCTTACAACAAAATCTGAGGATTCCTCGATTGGATTGGAGTACAGTGACACTTCCTCCCTCTCACGACCCTCTCATGCAAATATTCATGATGATGATGAAGCAGCAAAGTACTTCGGAATCCGAGCTCAAAACTAAAACCTTCTGGAAGTTGAAGGAGAGCCACCAAATTCTCCGCAACAGATTGTCACATAAGACTGCTCCTCAGAACTCAGCCAGCTCTTCCAAAAATCAATATGACGAACTGATTCAGAAATTCAACATGCAATATGATGCGTTTGTTGGGAAGAGACTAGACAACCTTTATGGTGTGGCAAAGTATGAGAGGGATAGTGGTGTTTTGAAAGAAAGAGCTGAAGAAATAGAGAGGGAATTGGATGCTGTGGTTGGGAGGCTCCAAAATTCAGAAGAGTTTGGAGATGTAATGACTGCAATGTTCTTGAATGGAGTCAGGGATGGAATCCTTGAAGCACGGGCCATCTTACTTGCTCTCCGCACGGAGGCTAAAAAAAAATGA 4062 0.3986 MGCVGFSYDVFISFRGEDTRDNFVGHLRKELGRRGILTFHDDRDMGIGESLSPALNNAMEESRIFIVVFSENYASSTWCLDELVRIMELSKMREKKQVVFPVFYHVHPSDILQDRNSFGKHMRAHENTFGKQSQRMQAWRSALSQAVHLPRKHITTGCENNFIEEIVGEVYKNIAPKPLYIGQKPLGLEPHIEEVMSLLDMKPDDKTVRMLGIYGLGGIGKTELAKALYDKVVQHFDAASFLAGVREKSNTINGMEDLQKTLLSEMLEESDTKLGSTNKGIYEIKRKLRRKKVLLVLDDVDDKEELEKLAGGCDWFGPGSRIIITTREKDVLIAHHVGHIYEMKELDEQHSLELFCWNAFGQGCPKTGFEDVSMRAVNYAKGLPLALKVIGSDLATLHEESLDAWEDALEEYEKTPPNKKIQDVLKISYDRLDDDAKQVFLDIACFFKGERMKYVKKILKEFCSTSNMKVLVNKSLITXENDRLKMHDLIQDMGRQIVRHEATNPGERSRIWDYEDVIEILNEDCGSDKIQGIMLDPPQQEKVKWSGTEFQKMKCLRILIVRNTSFSSELQHLPNHLRLLDWDNYPSKTFPPKFHPKKIVVFNLPRSCLTLEEPFKKFPCLTNMDFSYNQRIIEIPDVSELQNLTELRLDHCGNLIAVHESVGFLERLSHLSVSECKKLQIFMSRMFLPSLQIFNLNFCESLGHFPEIMKEMTKPLKIHMINTAIQELPESISKLTGLVSIDISNNRELKYLPRSLFMLPNVDSFIIKACSKLGESIRSLLQHPSKANVHQKLRLLNFKNGNLSDKDLLAIICYFPKLEELIVSENNFVSIPSCIKECGDLTSLDLNGCKKLKKIPELTSLRILDVHHCLYLEEISELPPTVQKIDARFCFNLTKETSDMLWCQVKKGVGGIEMVMPFLTEIPEWFNFVGVGRIPSFWVRGKFPKMVVAMIFHFQNESQRDKFDGRGLVDLRLLINGRYAPRKGYRNFRIEAEHILLCDVGVLCSEKEWVGNAVMEHEWNLVQVSYDATSSLMISGWGAFVFEEGTNMEDLLFASPNNLIVNGDSTSVHKGSLEDDEDYVPLPEGIAWEFLFEGIKDGIVEAWNKFPSMDVAEISVAALKKNCKIEWTVEGMEGIPSAENRTYMTGLYGVLLEAKLRFPDLDVGAALTTVANRKGIKGTFKSPLQQNLRIPRLDWSTVTLPPSHDPLMQIFMMMMKQQSTSESELKTKTFWKLKESHQILRNRLSHKTAPQNSASSSKNQYDELIQKFNMQYDAFVGKRLDNLYGVAKYERDSGVLKERAEEIERELDAVVGRLQNSEEFGDVMTAMFLNGVRDGILEARAILLALRTEAKKK* 1354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0317 1353 Gene3D - 6 175 IPR035897 -
Vra6g0317 1353 SUPERFAMILY L domain-like 485 881 - -
Vra6g0317 1353 Coils Coil 395 415 - -
Vra6g0317 1353 Gene3D - 176 338 IPR027417 -
Vra6g0317 1353 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 179 443 IPR027417 -
Vra6g0317 1353 Gene3D - 345 433 IPR042197 -
Vra6g0317 1353 Pfam NB-ARC domain 189 429 IPR002182 GO:0043531
Vra6g0317 1353 PRINTS Disease resistance protein signature 210 225 - -
Vra6g0317 1353 PRINTS Disease resistance protein signature 287 301 - -
Vra6g0317 1353 PRINTS Disease resistance protein signature 380 394 - -
Vra6g0317 1353 PRINTS Disease resistance protein signature 836 852 - -
Vra6g0317 1353 SUPERFAMILY Toll/Interleukin receptor TIR domain 5 146 IPR035897 -
Vra6g0317 1353 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 14 1040 - -
Vra6g0317 1353 Pfam TIR domain 8 173 IPR000157 GO:0007165
Vra6g0317 1353 Coils Coil 1286 1306 - -
Vra6g0317 1353 Gene3D Ribonuclease Inhibitor 542 718 IPR032675 -
Vra6g0317 1353 Gene3D Ribonuclease Inhibitor 719 904 IPR032675 -
Vra6g0317 1353 ProSiteProfiles TIR domain profile. 6 147 IPR000157 GO:0007165
Vra6g0317 1353 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 14 1040 IPR044974 GO:0006952
Vra6g0317 1353 SMART till_3 7 149 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0317 Vra-Chr6 2362573 2367630 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0317 8 822 WRKY Transcription Factor Family AT4G12020 29.988 1.24e-97 344
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0317 - - var:108338187 2000.33