Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0315 ATGGAAAAACATGGTGAGGAAGAAGAGTGTTCTCGCTATGATGTGTTCATTAGTTTTAGAGGTGAAGATATTAGGCATACCTTTCTACGGCAGCTCCGTGAAGGGTTGGGGAGGAGGGGAATACTCAGTTTCCATGATGACAGGGATATGAGAATAGGGACAGATCTTTCAATTGCTCTGCATGAGGCCATTGAAGAATCTAATGTTTTCATAGTTGTGTTTTCTGAGAACTATGCATCTTCCACATGGTGTCTGGATGAACTTGTTAAGATTATCCACCGCAGCCATACGAACATTAAGCAAGTTGTTCTTCCAGTGTTCTACCATGTAGATCCCTCAGATATACAGAAAATGAGAAATAGTTTCAGAAAACACATGGAGGCACACGAAAAAGAGTTTGGAAAAGAGTCGCAGAGAATGCAGGCTTGGAGGTCTGCTTTGTCTCAAGCAGCTAACTTGCCACGGATGCATATTACCACCACCACCGGATTTGAAAAGGATTATATTGAAGAAATTGTTGGGAAGGTCCAAATGAATCTATGTCGTAAACCTTTATATACTGGTCAGAACCCTCTTGGACTTGAGCCCCACATAGAAAAGGTTATGTCACTTTTGGACATTGATGACAACACTGTAAAAATGTTGAGCATATATGGACTTGGTGGAATTGGAAAAACGGAACTTGCCAAAGCTTTGTATAACAAAATTGTGCGACACTTTGATGCTGCAAGTTTTCTTGCCGGTGTTAGAGAAAAATCAAACACAATCAATGGCATGGAAGATCTACAGAAGACACTTTTATCTGAGATGTTTGAGGAGTCCGAAACTAAGTTGGGAAGTACCAATAAAGGAATTTATGAAATAAAACCAAAGAAGAAAGTTCTTTTGGTTCTTGACGACGTTGATGATAAAGAAAAGTTAGAAAAGTTGGCAGGAGGGTGTGATTGGTTTGGTCCAGGTAGTAGGATCATTATAACGACAAGGGAAAGAGATCTCCTAATTGTTGGAAATGTTTATGAAATGAAGGAACTTGATGAACAACATTCTTTGGAGCTCTTTTGTTGGAATGCCTTCGGACAAGGTTGTCCTAAAACTGGTTTTGAAGATGTGTCTATGCGTGCTGTAAATTACGCTAAAGGTCTTCCACTGGCTTTAAAAGTGCTAGGCTCTGATTTAGCTACTCTTCATGGAGAAAGTTTAGATGCTTGGGAAGATGCACTGGAAGAATATAAGAAGACTCCAAATAAAAAGATTCAAGATAATGTGCTTCAAGTATGCTACGATAGATTGGATTATAATGCCAAACAAGTTTTCTTGGACATAGCTTGCTTCTTTAAAGGGGAGAAAGTGGAATACGTGAACGAAATACTTGAGGAATTTTATTCAGAATCCAAAATGAAAGAACTTGTTAATAAATCTCTCATAACTATCGAGAATGGCTGCCTCAAGATGCATGATCTAATACAAGATATGGGTAGACAGATTGTTAGGCAGGAAGCACCAAATCCTGGTGAACGTAGCAGAATATGGGATTATGAAGATGTTCTTCAAATACTAACCGAAGATTCAGGAAGTGATAAGATTCAAGGGATTATGCTTGATCCTCCTCAGCAAGAAAAGGTAAAATGGAGTGGTACTGAGTTTCAGAAAATGAAATGCCTCAGAATTCTCATTGTTCGAAACACATCCTTTTCATCTGAACCTGAACATTTACCGAATCATTTAAGACTGCTTGACTGGGACAACTATCCTTCAAATTCTTTCCCAACAAAATTTCATCCAAAGAAAATCGTTGTTTTCAATTTGCCTAGAAGTTCTCTAACATTGGAAGAGCTGTCATTCAAGAAATTTCCATGCTTGACTAATATGGACTTTTCATATAACCAACGTATCATTGAAATACCTGATGTGTCCGAACTTCAGAATCTAAGAGAACTGAGACTTGATCATTGTAGAAACCTAATTGCAGTCCATGAATCTGTTGGATTTTTGAAAAGGCTTTCTCATTTAAGTGTTTCAGAATGCACAAAACTTCAAATTTTCATGTCCAGAATGTTTCTACCATCTCTAGAAGTCTTTGACCTCAACTTATGTGAAAGCATTGATCATTTCCCAGAGATAATGCAAGAAATGACCAAGTCACTGAAGATTAAAATGAAAAATACGGGTATTCAAGAGCTTCCAGAATCCATCAGTAATCTTACTGGGCTTGTTTCTATAGACATATCGAGTAATAAGGAACTTAAGTATTTACCAAGGAGCGTATTCATGTTGCCAAACTTAGAAGAATTGATTGTTTCAGAGAACAATTTTGTATCTATCCCTTCGTGCATCAAGCAATGTGGTGACTGGACAAGTCTCGATTTGAATGGAAGCAAGAAGCTTAAAAAAATTTCTGAACCCACCAGCTTGAGAATTCTTGATGTTCATCATTGTTTAGACCTTGAAGAAATTTCAGAGTTGCCGTCCACTGTTCAGAAAGTAGATGCAAGATTTTGTTTCAAGTTAACAAAAGAGACATCAAACATGCTATGGTGTCAGGTGAAGAAAGGGGTTGGTGGAATTGAAATGGTGATGCCATTTTTAACTGAGATTCCAGAATGGTTTAACTTCGTGGGAGTCGAAAGGATTCCTGGTTTTTGGGTTCGTGGCAAGTTTCCTAACATTGTTCTAGCCATGATCTTCCACTTCGAAAATCCAAATCAAAGGGAGGAATATGGTCGCCGTCACCTTGTTGATCTGCGTCTACTTATCAACGGTCGATATGCTCCTCGCAAAGGGTATCAGAACTTTAGAATTGAAGCAGAACACATCTTGGTGTGTGATTTACGAGTTTTGTTCAGTGAGAAGGAGTGGTTTGGCCTTGATGCACTTCTGGAGGATGAGTGGAATCTGGTTGAGGTTGCGTATGATGCGACTTCGTCCTTGATGATAAGTGGTTGGGGAGCTTTTGTGTATGAAGAAGAAATCAACATGGAACATCTCCTATTTACTTATCCCTATCCCGTGATTGTCAACGAAGCTTCAACCTCTGGCCATATGGAAAGTGAGGAGGAGGAAAAAGGCTACTTTGCTTATCTGGAAGGAATAGCGTGGGAAACATTGTATGAAGGAGTGAGGGATGGACTTTTTGAGGCAAGGAATAGATTTCCTTCTATGGATATTGATGAAATCTTTACAGCTACCTTGGAGAAGGGTCCTAGGATTGAATGGACAGCTGAAGGGATGGAGCTAATACCGTCAGCTGAACATAGGACATACTTCAATGGAATTTACTCCGGACTCTTAGAAGCAAAGCTGAGGTTTCCTGATTTGGACGTGTGGGCAACACTAAATACTGTGGCAAATAGGAGAGGGATTAAAGGAACTTTCGAATCACCCTTACAACAAAATCTGTGGATTCCTCGATTGGATTGGAGTACAGTGACACTTCCTCCCTCTCACGACCCTTTGATGCAAATATTCATGATGATGATGAAGCAGCAAAGTACTTCGGAATCCGAACTCAAAACTAAAACCTTCTGGAAGTTGAAGGAGAGCCACCAAATTCTCCGCAACAGATTATCACATAAAACTGCTCCTCAGAACTCAGCCAGCTCTTCGAAAAATCAATATGACGAACTGATTCAGAAATTCAACATGCAATATGATGCGTTTGTTGGGAAGAGACTAGACAACCTTTATGGTGTGGCAAAGTATGANANGGATAGTGNTGTTTTGAAAGAAAGAGCTGAAGAATTAGAGAGGGTATTGGATGCTGTTGTTGGGAGGCTCCAAAATTCAGAAGAGTTTGGAGATGTAATGACTGCAATGTTCTTGAATGGAGTCAGGGATGGAATCCTTGAAGCACGGGCCATCTTAGTTGCTCTCCGCACGGAGGATAAAAAAAAATGA 3894 0.395 MEKHGEEEECSRYDVFISFRGEDIRHTFLRQLREGLGRRGILSFHDDRDMRIGTDLSIALHEAIEESNVFIVVFSENYASSTWCLDELVKIIHRSHTNIKQVVLPVFYHVDPSDIQKMRNSFRKHMEAHEKEFGKESQRMQAWRSALSQAANLPRMHITTTTGFEKDYIEEIVGKVQMNLCRKPLYTGQNPLGLEPHIEKVMSLLDIDDNTVKMLSIYGLGGIGKTELAKALYNKIVRHFDAASFLAGVREKSNTINGMEDLQKTLLSEMFEESETKLGSTNKGIYEIKPKKKVLLVLDDVDDKEKLEKLAGGCDWFGPGSRIIITTRERDLLIVGNVYEMKELDEQHSLELFCWNAFGQGCPKTGFEDVSMRAVNYAKGLPLALKVLGSDLATLHGESLDAWEDALEEYKKTPNKKIQDNVLQVCYDRLDYNAKQVFLDIACFFKGEKVEYVNEILEEFYSESKMKELVNKSLITIENGCLKMHDLIQDMGRQIVRQEAPNPGERSRIWDYEDVLQILTEDSGSDKIQGIMLDPPQQEKVKWSGTEFQKMKCLRILIVRNTSFSSEPEHLPNHLRLLDWDNYPSNSFPTKFHPKKIVVFNLPRSSLTLEELSFKKFPCLTNMDFSYNQRIIEIPDVSELQNLRELRLDHCRNLIAVHESVGFLKRLSHLSVSECTKLQIFMSRMFLPSLEVFDLNLCESIDHFPEIMQEMTKSLKIKMKNTGIQELPESISNLTGLVSIDISSNKELKYLPRSVFMLPNLEELIVSENNFVSIPSCIKQCGDWTSLDLNGSKKLKKISEPTSLRILDVHHCLDLEEISELPSTVQKVDARFCFKLTKETSNMLWCQVKKGVGGIEMVMPFLTEIPEWFNFVGVERIPGFWVRGKFPNIVLAMIFHFENPNQREEYGRRHLVDLRLLINGRYAPRKGYQNFRIEAEHILVCDLRVLFSEKEWFGLDALLEDEWNLVEVAYDATSSLMISGWGAFVYEEEINMEHLLFTYPYPVIVNEASTSGHMESEEEEKGYFAYLEGIAWETLYEGVRDGLFEARNRFPSMDIDEIFTATLEKGPRIEWTAEGMELIPSAEHRTYFNGIYSGLLEAKLRFPDLDVWATLNTVANRRGIKGTFESPLQQNLWIPRLDWSTVTLPPSHDPLMQIFMMMMKQQSTSESELKTKTFWKLKESHQILRNRLSHKTAPQNSASSSKNQYDELIQKFNMQYDAFVGKRLDNLYGVAKYXXDSXVLKERAEELERVLDAVVGRLQNSEEFGDVMTAMFLNGVRDGILEARAILVALRTEDKKK* 1298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0315 1297 SUPERFAMILY "Winged helix" DNA-binding domain 421 519 IPR036390 -
Vra6g0315 1297 Gene3D Ribonuclease Inhibitor 684 841 IPR032675 -
Vra6g0315 1297 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 759 981 - -
Vra6g0315 1297 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 20 750 - -
Vra6g0315 1297 Pfam NB-ARC domain 195 417 IPR002182 GO:0043531
Vra6g0315 1297 PRINTS Disease resistance protein signature 214 229 - -
Vra6g0315 1297 PRINTS Disease resistance protein signature 288 302 - -
Vra6g0315 1297 PRINTS Disease resistance protein signature 378 392 - -
Vra6g0315 1297 PRINTS Disease resistance protein signature 638 654 - -
Vra6g0315 1297 SMART till_3 12 153 IPR000157 GO:0007165
Vra6g0315 1297 Gene3D Ribonuclease Inhibitor 538 683 IPR032675 -
Vra6g0315 1297 Gene3D - 181 337 IPR027417 -
Vra6g0315 1297 Coils Coil 1239 1250 - -
Vra6g0315 1297 Coils Coil 1230 1233 - -
Vra6g0315 1297 Gene3D - 10 180 IPR035897 -
Vra6g0315 1297 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 759 981 IPR044974 GO:0006952
Vra6g0315 1297 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 20 750 IPR044974 GO:0006952
Vra6g0315 1297 SUPERFAMILY L domain-like 531 838 - -
Vra6g0315 1297 Pfam TIR domain 13 174 IPR000157 GO:0007165
Vra6g0315 1297 Gene3D - 343 431 IPR042197 -
Vra6g0315 1297 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 183 441 IPR027417 -
Vra6g0315 1297 Coils Coil 1236 1237 - -
Vra6g0315 1297 ProSiteProfiles TIR domain profile. 11 180 IPR000157 GO:0007165
Vra6g0315 1297 SUPERFAMILY Toll/Interleukin receptor TIR domain 11 153 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0315 Vra-Chr6 2344933 2352725 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0315 13 830 WRKY Transcription Factor Family AT4G12020 30.271 1.57e-86 309
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0315 - - var:108338187 2175.98