Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0314 ATGAAAAGGAGGAACATAGCCCACAGGTTAGAAGAAGCTTCCCAAGTTTTACAGAGATTAACAATGGATGTGCCCAAGTTACATAATTCTGATGAAGAAGACAAGAAAGAAGACGAAGTTGTGCTTCCCGGCTTCAGATTCCATCCTACAGACGAAGAGCTTGTAGGCTTTTATCTCAGGCGAAAGGTGGAGAAGAAGCCTCTCAGAATTGAACTCATCAAACAGATTGACATCTACAAATATGATCCATGGGACCTTCCAACAAGTTCTGTGGGGGAGAAGGAGTGGTATTTCTTCTGCATAAGAGGGAGAAAGTACAGAAACAGCATAAGGCCTAACAGAGTGACAGGTTCTGGGTTTTGGAAAGCCACAGGGATTGATAAACCGATATACTGTGTTAAAGAACCCCATGAATGCATTGGGTTGAAGAAATCGTTGGTGTATTACCGTGGAAGTGCTGGAAAAGGCACCAAAACTGATTGGATGATGCATGAGTTTCGTCTTCCACCCAATGGAAAATCCACCACTAACGACATTCAAGAAGCTGAAGTGTGGACGCTATGTCGAATATTCAAACGAGTCCCATCTTACAAGAGGTACACACCAAATTTGAAAGACTCAAACACAGCACCAATCACGAAGCCAAACCCCACAAACTCTTCAAGTTCAAAAACATGCAGTTTAGAATCTGAGACTTTCACAAACTCACCATCATCACTGCTCCTTCACCAAAACCAAATCATCAAACCAGTTTTTGGACATGTTGACCAACACCCTCCGACATCCTTTTCTTACTCCACTTTTTGGAACCATCAGAATCTGGAATTGGCTCATGATGAGAATTGGGATGATCTCACTTCTGTCGTTCAGTTTGCTGTTGATCCATCCAGGCTTTCTGATCACTGTAAAGAGTTTAATGCATTTTGA 927 0.4229 MKRRNIAHRLEEASQVLQRLTMDVPKLHNSDEEDKKEDEVVLPGFRFHPTDEELVGFYLRRKVEKKPLRIELIKQIDIYKYDPWDLPTSSVGEKEWYFFCIRGRKYRNSIRPNRVTGSGFWKATGIDKPIYCVKEPHECIGLKKSLVYYRGSAGKGTKTDWMMHEFRLPPNGKSTTNDIQEAEVWTLCRIFKRVPSYKRYTPNLKDSNTAPITKPNPTNSSSSKTCSLESETFTNSPSSLLLHQNQIIKPVFGHVDQHPPTSFSYSTFWNHQNLELAHDENWDDLTSVVQFAVDPSRLSDHCKEFNAF* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0314 308 MobiDBLite consensus disorder prediction 202 225 - -
Vra6g0314 308 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 25 306 - -
Vra6g0314 308 PANTHER - 25 306 - -
Vra6g0314 308 Pfam No apical meristem (NAM) protein 43 168 IPR003441 GO:0003677|GO:0006355
Vra6g0314 308 ProSiteProfiles NAC domain profile. 41 193 IPR003441 GO:0003677|GO:0006355
Vra6g0314 308 SUPERFAMILY NAC domain 40 192 IPR036093 GO:0003677|GO:0006355
Vra6g0314 308 Gene3D NAC domain 50 196 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0314 Vra-Chr6 2338226 2340973 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0314 31 194 NAC Transcription Factor Family AT5G39820 58.289 1.67e-73 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vra6g0314 NAM 8e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0314 - - gmx:100784323 443.351
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0314 6 2338226 2340973 Vra6g0314 6 2338226 2340973 ECH