Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0307 ATGGTTTTGAAGGTTTCTCTCATTATGGTTCTCCTTGTGACATGCTCCTGTGTCGTGGAAGCCTTTTCAATGAATCTCGATCATCGTCACAGCCAAAATGGATCTTCTCTGGCTGCCATCAAGTTTCCTGATCATCCAAGCTTTAGTACTGTCTCCTCTTCCGGGGACACTGATTGCAGCCTCTCGAGTTCTGAGGAGCTCGGGCATTCTGGGTCTACCATGACATCAGGTGAAGAAACTGATGAAGAGGGTGAGGCTTTTCCAGCTCCAAACCCGCACAAGCAATTGGTGAAACTCCACTTGAAACACAGGTCAGGGAGCGAAGATGCTGAGCCTAAAAAATCTGTGGTTGATTCCGCCGTGAGGGATTTGACCAGAATTCAGAACCTTCACAGAAGGGTCATAGAGAAGAAGAATCAAAACGCCATTTCAAGGCTGCAAAAGTCACAGAACCAACCAAAGCAGTCCTTCGAGCCTGTGGTTTCTCCGGGGGCTTCGCCGGCAGGTGGGGTTTCCGGGCAGCTTGTGGCAACTTTGGAATCTGGGGTGAGTCTTGGCTCCGGTGAGTACTTCATGGATGTGTTTGTGGGCACACCTCCTAAGCATTTCTCTCTGATACTTGATACTGGTAGTGACCTTAATTGGATCCAATGTGTTCCTTGCATTGCATGTTTTGAGCAAAGTGGACCATATTATGACCCCAAAGATTCTAGTTCTTTTAGGAATATAAGCTGTCATGATCCACGGTGCCAACTGGTTTCATCCCCTGATCCACCTAGGCCTTGCAAAGGTGAGAATCAGAGCTGTCCCTACTTCTACTGGTATGGTGATGGTTCAAACACAACTGGGGATTTTGCATTGGAAACATTTACCGTTAATCTCACCACTCCTTCTGGGGGGTCAGAGCTGAAGCATGTGGAGAATGTGATGTTTGGATGTGGTCATTGGAATAGGGGTCTCTTTCATGGGGCTGCTGGTTTGCTAGGCTTGGGGAGAGGACCATTGTCATTTGCTTCTCAGATGCAATCTCTCTATGGCCACTCCTTTTCCTATTGTCTTGTGGACAGAAATAGCAATGCAAGTGTGAGCAGCAAATTGATTTTTGGTGAGGACAAGGAGCTGCTCAACCACCCCAATTTGAATTTCACTTCTTTTGCCGGATCAAAAGAGGATTCAGTTGACACATTTTACTATGTCCAGATAAAGTCTGTTATGGTTGACGGTGAGGAGTTGAAGATACCTGAGGAAACTTGGCATTTGTCAGCAGAAGGTGCTGGTGGCACCATAATTGATTCTGGCACCACATTAACATATTTTGCTGAACCTGCTTATGAGATTATCAGGGAGGCTTTTGTGAAGAAGATTAAGGGCTATGCACTCATTGAAGGCCTTCCTCCTCTGAAGCCATGTTACAATGTGTCAGGAATTGACAAGATGGAGCTACCTGACTTTGGAATTTTATTTGCTGATGGAGCAGTGTGGAATTTCCCAGTGGAGAATTACTTTATCCAGATTGATTCTGATATTGTTTGCTTGGCTATTTTGGGAACTTCTCGATCTGCTCTTTCAATAATCGGAAACTATCAGCAGCAGAATTTCCACATACTATATGACATGAAGAAATCCAGACTTGGTTATGCACCAATGAAGTGTGCTGATGTTGGTTTAGTTTACACAGTAGTTGATTATCTATTAGCAGAAGAACAGCAATTGACGGAGCAATTTAAATCGGTGGGGATGGTTGCTGTTAGGTTTCACCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAACATCCTAAGATCTACCGCATGAAACTATGGGCTACCAACGAGGTCCGCGCCAAATCCAAGTTCTGGTATTTCTTGAGAAAATTGAAGAAGGTCAAGAAAAGCAATGGGCAAATGCTAGCTATTAACGAGATCTTTGAGAAGAATCCTACCAAGATTAAGAACTATGGAATTTGGCTGCGATATCAAAGTCGCACTGGTTATCATAATATGTACAAGGAGTACCGTGACACGACTCTGAATGGTGCTGTTGAGCAAATGTACAATGAAATGGCATCTCGTCATAGAGTGAGGCATCCATGCATCCAGATAATTAAGACTGCCACCATCCCTGCTAAGCTGTGCAAAAGGGAGAGTACCAAGCAGTTCCACAATTCTAAAATCAAATTCCCATTGGTGTTCAAAAAGGTTAGACCCCCAACTAGGAGGCTCAAGACAACATACAAGGCATTCAGGCCAAACCTGTTCATGTGA 2274 0.4481 MVLKVSLIMVLLVTCSCVVEAFSMNLDHRHSQNGSSLAAIKFPDHPSFSTVSSSGDTDCSLSSSEELGHSGSTMTSGEETDEEGEAFPAPNPHKQLVKLHLKHRSGSEDAEPKKSVVDSAVRDLTRIQNLHRRVIEKKNQNAISRLQKSQNQPKQSFEPVVSPGASPAGGVSGQLVATLESGVSLGSGEYFMDVFVGTPPKHFSLILDTGSDLNWIQCVPCIACFEQSGPYYDPKDSSSFRNISCHDPRCQLVSSPDPPRPCKGENQSCPYFYWYGDGSNTTGDFALETFTVNLTTPSGGSELKHVENVMFGCGHWNRGLFHGAAGLLGLGRGPLSFASQMQSLYGHSFSYCLVDRNSNASVSSKLIFGEDKELLNHPNLNFTSFAGSKEDSVDTFYYVQIKSVMVDGEELKIPEETWHLSAEGAGGTIIDSGTTLTYFAEPAYEIIREAFVKKIKGYALIEGLPPLKPCYNVSGIDKMELPDFGILFADGAVWNFPVENYFIQIDSDIVCLAILGTSRSALSIIGNYQQQNFHILYDMKKSRLGYAPMKCADVGLVYTVVDYLLAEEQQLTEQFKSVGMVAVRFHQYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYNEMASRHRVRHPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRRLKTTYKAFRPNLFM* 758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0307 757 Gene3D Acid Proteases 371 556 IPR021109 -
Vra6g0307 757 Gene3D - 575 650 - -
Vra6g0307 757 MobiDBLite consensus disorder prediction 145 159 - -
Vra6g0307 757 PANTHER ASPARTYL PROTEASES 37 553 IPR001461 GO:0004190|GO:0006508
Vra6g0307 757 MobiDBLite consensus disorder prediction 145 169 - -
Vra6g0307 757 Gene3D - 651 726 - -
Vra6g0307 757 SUPERFAMILY Acid proteases 182 552 IPR021109 -
Vra6g0307 757 SUPERFAMILY RplX-like 650 725 - -
Vra6g0307 757 PRINTS Pepsin (A1) aspartic protease family signature 196 216 IPR001461 GO:0004190|GO:0006508
Vra6g0307 757 PRINTS Pepsin (A1) aspartic protease family signature 428 439 IPR001461 GO:0004190|GO:0006508
Vra6g0307 757 PRINTS Pepsin (A1) aspartic protease family signature 523 538 IPR001461 GO:0004190|GO:0006508
Vra6g0307 757 MobiDBLite consensus disorder prediction 49 91 - -
Vra6g0307 757 CDD pepsin_A_like_plant 189 551 IPR034161 -
Vra6g0307 757 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 17 - -
Vra6g0307 757 Pfam Xylanase inhibitor C-terminal 397 547 IPR032799 -
Vra6g0307 757 ProSiteProfiles Peptidase family A1 domain profile. 190 547 IPR033121 -
Vra6g0307 757 Pfam Xylanase inhibitor N-terminal 190 369 IPR032861 -
Vra6g0307 757 Pfam Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A 586 707 IPR023573 GO:0003735|GO:0005840|GO:0006412
Vra6g0307 757 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 205 216 IPR001969 GO:0004190|GO:0006508
Vra6g0307 757 Coils Coil 132 152 - -
Vra6g0307 757 Gene3D Acid Proteases 172 370 IPR021109 -
Vra6g0307 757 MobiDBLite consensus disorder prediction 49 77 - -
Vra6g0307 757 PANTHER ASPARTYL PROTEASE FAMILY PROTEIN 2-LIKE 37 553 - -
Vra6g0307 757 Hamap 50S ribosomal protein L18Ae [rpl18a]. 585 648 IPR028877 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0307 Vra-Chr6 2266575 2271555 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0307 580 757 Cytoplasmic Ribosomal Protein Gene Family AT2G34480 91.011 1.28e-115 346
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0307 K22683 - zju:107416111 1086.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0307 6 2266575 2271555 Vra6g0307 6 2266575 2271555 ECH