Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0299 ATGTCATCCAACAGTTCTTTGAAAGGGGAATTGACAAAGAAGACTCCATTTTTGGGGTTGAGACGATGGGTTTTGATTGGAGTAGGTGTTGGTGCATTTATAGTGCTTATTCTTTGTATATTATCGATATGGGTGATGTTTCGGAGAAAGTCTAGGAGATCTTTGGACAAGTATTCTGTATCCCAAATACCAAATGTCTCAAAAGATATCGACGTTGACAAGGTTGGGGTGCAGAGTTCTCTTGTTCAACCAGAAAATGTGCTTATGCCTATTGTTCATAACATGACAAGTGATAAGAATTCAGATAATATATCAGTTCATTTAGGTAACAGCAAATCTGGGGATCCTGATAATATCAGTCAGTGCAGCTCAATTTATCATCATGAGAGAGGATTTAGTTCAATGTCAGCTGAAGAAGGAAGCTCTGGGAATGTTAAGAAACAATCCACATTGTCAAATGGAGGGTTGGCTACTGCCTCTCCATTAGTTGGCCTGCCTGAATTTTCTCATCTTGGGTGGGGCCACTGGTTTACACTCAGAGATCTGGAAATGGCAACCAAACGATTCTCAGCTGAGAACATTATTGGTGAGGGTGGATATGGGGTTGTTTACAAGGGAATACTGATTAATGGAATTGAGGTGGCAGTGAAGAAGCTTCTTAACAACTTGGGACAGGCTGAGAAAGAATTCAGGGTTGAAGTGGAGGCTATAGGACATGTTAGACATAAGCATCTCGTACGCCTTCTCGGATATTGTGTAGAGGGAGTTCATAGGCTGCTTGTGTATGAATATGTGAACAATGGTAACTTAGAACAGTGGTTACATGGAGACATGCACCAACATGGGACACTTACTTGGGAGGCCCGCTTGAAAGTTATACTTGGCACAGCCAAAGCGCTTGCTTATTTACATGAAGCAATAGAACCAAAGGTTATTCATCGGGACATAAAGTCTAGCAACATATTGATTGATGATGAGTTCAATGCAAAGGTTTCTGATTTTGGCTTGGCCAAACTTTTGGATTCGGGAGAAAGTTACATAACCACAAGAGTAATGGGAACGTTTGGTTATGTGGCACCAGAATACGCTAACAGTGGTTTGTTAAATGAGAAGAGTGACATTTACAGCTTTGGTGTCCTCTTGCTGGAAGCAGTTACTGGAAGGGATCCTGTAGACTATGCTCGTCCTGCCAATGAGGTTAATCTGGTTGAGTGGCTCAAAATGATGGTAGGAACAAGAAGGGCTGAAGAAGTAGTGGACTCAAACCTTGAAGTTAAACCACCTTTGCGTGCTTTGAAACGAACTCTTCTGGTTGCACTTAGATGTATTGATCCTGATGCTGACAAGAGGCCCAAAATGAGTCAAGTTGTGAGAATGCTTGAAGCTGATGAATATCCATACCGAGAGGATAGAAGAAACAGAAAAAGTGGCACTGTCAACATGGAAATTGAAACTGCGAAGGATATTTCGGGTCCATCTGACGCTGAAAGGATGGGGCATACTGAAACAACTCAAGGATAG 1521 0.4188 MSSNSSLKGELTKKTPFLGLRRWVLIGVGVGAFIVLILCILSIWVMFRRKSRRSLDKYSVSQIPNVSKDIDVDKVGVQSSLVQPENVLMPIVHNMTSDKNSDNISVHLGNSKSGDPDNISQCSSIYHHERGFSSMSAEEGSSGNVKKQSTLSNGGLATASPLVGLPEFSHLGWGHWFTLRDLEMATKRFSAENIIGEGGYGVVYKGILINGIEVAVKKLLNNLGQAEKEFRVEVEAIGHVRHKHLVRLLGYCVEGVHRLLVYEYVNNGNLEQWLHGDMHQHGTLTWEARLKVILGTAKALAYLHEAIEPKVIHRDIKSSNILIDDEFNAKVSDFGLAKLLDSGESYITTRVMGTFGYVAPEYANSGLLNEKSDIYSFGVLLLEAVTGRDPVDYARPANEVNLVEWLKMMVGTRRAEEVVDSNLEVKPPLRALKRTLLVALRCIDPDADKRPKMSQVVRMLEADEYPYREDRRNRKSGTVNMEIETAKDISGPSDAERMGHTETTQG* 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0299 506 SMART serkin_6 189 460 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g0299 506 CDD STKc_IRAK 195 461 - -
Vra6g0299 506 ProSitePatterns Serine/Threonine protein kinases active-site signature. 311 323 IPR008271 GO:0004672|GO:0006468
Vra6g0299 506 PANTHER OS01G0323000 PROTEIN 2 503 - -
Vra6g0299 506 Pfam Protein kinase domain 191 458 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g0299 506 ProSitePatterns Protein kinases ATP-binding region signature. 195 218 IPR017441 GO:0005524
Vra6g0299 506 Coils Coil 209 229 - -
Vra6g0299 506 PANTHER RECEPTOR-LIKE KINASE PLANT 2 503 - -
Vra6g0299 506 Gene3D Phosphorylase Kinase; domain 1 170 264 - -
Vra6g0299 506 SUPERFAMILY Protein kinase-like (PK-like) 173 462 IPR011009 -
Vra6g0299 506 MobiDBLite consensus disorder prediction 468 506 - -
Vra6g0299 506 Gene3D Transferase(Phosphotransferase) domain 1 265 478 - -
Vra6g0299 506 ProSiteProfiles Protein kinase domain profile. 189 468 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0299 Vra-Chr6 2228800 2233539 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0299 19 463 Trihelix Transcription Factor Family AT1G70460 39.911 2.90e-96 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Vra6g0299 Pkinase 3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0299 - - gmx:100798916 924.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0299 6 2228800 2233539 Vra6g0299 6 2228800 2233539 ECH
Vra6g0299 6 2228800 2233539 Vra6g0299 6 2228800 2233539 PCT
Vra6g0928 6 10051494 10056572 Vra6g0299 6 2228800 2233539 PCT