Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0298 ATGGCGAATGAGAAGGATCGTTTTTATGACCCTTTTCATTACAACCACCACGAACACCAACTCAACCACTCTTCAAACTTTCCATTCTTTAGGGACAACAACTCTGCACCAATTGCCTCACAAAACTTTCAAGGGTTTCCTTCTCATCAACGCACCACTTTCACTGACTGCTTACATGGTTCCATGGATTACAACACCCTCTCCAGAGCCTTTGACATGTCTTGCTCATCATCTGAAGTGCTCTCTTCCATTGATGAAAACCCCAAGAAGCCTAGTGCAGGAGACTCCGCAGGGATCAGTGGAAACCAGTCAACACCCAATTCATCGGTTTCCTCCTCATCCAATGAAGCTGAAGCACTCCTAGAAGAAGACTCCACCAAAACCCAGAAGAAAGATAAACAGCCAAAAGGGTGCGAAGATGAAGAAGAAAAGCCTAAGAAAGAGAACAAGCCTAAAAAGAAAGAGAAAAAGCCAAGAGAGCCTCGTTTTGCCTTCTTGACTAAAAGTGAGATAGACAACCTTGAAGATGGATACAGATGGAGAAAATATGGACAGAAAGCAGTCAAGAACAGTCCCTACCCAAGGAGCTACTATAGGTGCACCAGTCAGAAGTGCAGCGTCAAAAAAAGGGTGGAAAGATCATTCCAAGATCCATCAATTGTGATCACAACATATGAAGGGCAACACAACCATCACTGTCCAGCAACGCTAAGGGGCAGCGCCGCCACCATGTTGTCAGCACCTCCTTTTTTTGGTTCCTCTTACATGGGCTCAAGCTTACCTCAAGATTTTCTTGCTCAGTTTCTTCCAAGTTATACCCAAAATGATCACCAAAATCCAATGTTCAACCAAAACCTTTCCAACAATCTCCATCTCCAGCCGCAACAACATCAGCAGCACCAGTTCCAACTCCCTCGTGACTATGGTTTGCTGCAAGACCTGCTGCCATCATCATTCCCAGGCAAACAAGAGCCATGA 978 0.4509 MANEKDRFYDPFHYNHHEHQLNHSSNFPFFRDNNSAPIASQNFQGFPSHQRTTFTDCLHGSMDYNTLSRAFDMSCSSSEVLSSIDENPKKPSAGDSAGISGNQSTPNSSVSSSSNEAEALLEEDSTKTQKKDKQPKGCEDEEEKPKKENKPKKKEKKPREPRFAFLTKSEIDNLEDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCSVKKRVERSFQDPSIVITTYEGQHNHHCPATLRGSAATMLSAPPFFGSSYMGSSLPQDFLAQFLPSYTQNDHQNPMFNQNLSNNLHLQPQQHQQHQFQLPRDYGLLQDLLPSSFPGKQEP* 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0298 325 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 2 318 IPR044810 GO:0003700
Vra6g0298 325 PANTHER WRKY TRANSCRIPTION FACTOR 71-RELATED 2 318 - -
Vra6g0298 325 SUPERFAMILY WRKY DNA-binding domain 167 234 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vra6g0298 325 Pfam WRKY DNA -binding domain 175 231 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra6g0298 325 Gene3D WRKY domain 159 235 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vra6g0298 325 MobiDBLite consensus disorder prediction 96 119 - -
Vra6g0298 325 ProSiteProfiles WRKY domain profile. 169 234 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra6g0298 325 MobiDBLite consensus disorder prediction 82 165 - -
Vra6g0298 325 MobiDBLite consensus disorder prediction 120 165 - -
Vra6g0298 325 SMART WRKY_cls 174 233 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0298 Vra-Chr6 2215772 2218066 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0298 1 325 WRKY Transcription Factor Family AT4G18170 42.353 1.19e-57 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vra6g0298 WRKY 8.5e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0298 - - aprc:113847247 457.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0298 6 2215772 2218066 Vra6g0298 6 2215772 2218066 ECH