Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0296 ATGAAGCAGAAGAGAGCGATTTCCTCTTTGTTACTTCACATTTGCCTCAAAGTGTCCTCTGTTTGTGAAATGGATAGAAAGCAAGAACAAGAGAAGGGGAACTCAAACATGTCTGGCATTGATGTTACTGTAATAACTCCAAAAGTCCCAAAAGCAGTTTCACCTGTTTCTTCTGCAGCAGAGGGGGACACCTTAAGGCGGCCACGTGGAAGGCCAGCCGGCTCAAAAAACAAGCCTAAACCACCAATAATTGTCACCAGAGAAAGTGCCAATGCACTGAAGGCTCATGCTATGGAAGTGAGTTCAGGCTGTGATGTGAATGAAAGTTTGTTGAACTTTGCAAGGAGAAAGCAACGTGGCCTTTACATACTCAATGGAACAGGCTGTGTGACAAATGTAACACTGCGCCAACCAGGGTCATCTGGTGCCATTGTGACCCTTCATGGTAGGTTTGAGATTTTGTCACTGCTGGGGTCAATCCTTCCCCCACCAGCCCCTCCAGGGATCACAGGCCTCACAATTTACTTGGCAGGTGCTCAAGGGCAAGTTGTGGGAGGTGCTGTGGTTGGTGCTTTGATTGCTTCAGGCCCTCTTGTAATCATGGCTGCATCATTCATGCATGCTACTTTCGATCGTCTGCCTTTGGAAGATGATGAACTTTCTGCTGCAATGCAGAATCAGCATTACCAAAATGGACGCACTCACCATCTTGACATCTCTGACTTGTATGCAATGCCACAGAACCTGCTCATGAATGGTACAATGCCCCAAGAGATATACTCTTGGGCACCAGGGCGGAACTTGTCAAAAACCTGA 816 0.4718 MKQKRAISSLLLHICLKVSSVCEMDRKQEQEKGNSNMSGIDVTVITPKVPKAVSPVSSAAEGDTLRRPRGRPAGSKNKPKPPIIVTRESANALKAHAMEVSSGCDVNESLLNFARRKQRGLYILNGTGCVTNVTLRQPGSSGAIVTLHGRFEILSLLGSILPPPAPPGITGLTIYLAGAQGQVVGGAVVGALIASGPLVIMAASFMHATFDRLPLEDDELSAAMQNQHYQNGRTHHLDISDLYAMPQNLLMNGTMPQEIYSWAPGRNLSKT* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0296 271 MobiDBLite consensus disorder prediction 53 82 - -
Vra6g0296 271 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 23 270 IPR014476 GO:0003680
Vra6g0296 271 CDD DUF296 96 176 IPR005175 -
Vra6g0296 271 ProSiteProfiles PPC domain profile profile. 90 228 IPR005175 -
Vra6g0296 271 Pfam Plants and Prokaryotes Conserved (PCC) domain 95 205 IPR005175 -
Vra6g0296 271 SUPERFAMILY AF0104/ALDC/Ptd012-like 90 221 - -
Vra6g0296 271 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 16 23 270 - -
Vra6g0296 271 Gene3D - 92 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0296 Vra-Chr6 2202257 2204150 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0296 24 270 AT-hook Motif Nuclear Localized (AHL) Family AT2G42940 67.068 1.85e-102 297
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0296 - - vra:106765118 494.582
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0296 6 2202257 2204150 Vra6g0296 6 2202257 2204150 ECH