Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0291 ATGCAGCAAGATCACAGAAAAAAGGGCTCAATGGAGATGGAATTTTTCTCCGATTATGGCGATGCCAACAGGTACAAAATTCAAGAAGTCATCGGGAAAGGCAGTTATGGTGTTGTTTGTTCAGCTATAGACACTCATACTGGCGAGAAAGTAGCAATTAAAAAGATACATGATATCTTCGAGCATGTATCTGATACTGCGCGTATTCTCCGTGAGATAAAGTTGCTTAGACTTCTTCGACATCCTGATATTGTTGAAATTAAGCATGTTATGTTGCCACCTTCGAGGAGGGACTTTAAGGATATTTATGTCGTTTTTGAGCTAATGGAGTCTGATCTGCATCAAGTCATTAAAGCCAATGATGACTTAACAAAAGAGCACTATCAATTTTTTCTGTACCAATTGCTTCGAGCACTGAAGTATATTCACACTGCAAATGTCTATCATCGAGACTTGAAGCCAAAGAATATATTAGCCAATGCAAACTGTAAACTTAAAATATGTGATTTTGGCTTAGCTAGAGTTGCTTTTAGTGACACGCCAACAACTGTATTTTGGACGGATTATGTTGCTACAAGGTGGTATAGAGCACCGGAGCTCTGTGGATCCTTTTACTCAAGGTATACTCCAGCAATTGATATTTGGAGTATAGGTTGCATCTTTGCTGAAGTATTGATAGGAAAGCCACTTTTTCCTGGAAAAAATGTTGTGCATCAGTTGGATCTGATGACAGATCTGCTTGGTACGCCCTCGCTTGATACGATATCTCGGGTACGCAATGATAAGGCACGGAGATACCTGACTAGTATGAGGAAAAAACAGCCTATACCATTTGCACAAAAGTTTCCTAATGCAGATCCTTTAGCCCTACGACTACTTGAAAAGTTACTCGCCTTTGATCCAAAAGACCGGCCAACTGCTGAAGAGGCATTAGCTGATCCTTACTTCAAGGGACTTGCGAAAGTTGAGAGGGAGCCATCGTGCCAGCCTATTACAAAAATGGAGTTTGAATTCGAAAGGAGAAGAGTCACAAAGGAAGAAATTGGAGAGTTAATTTTTCGTGAGATTCTAGAGTATCATCCTCAACTATTGAAAGACTACATAAATGGAACAGAGAGAACTAATTTTCTTTACCCAAGTGCTGTTGATCAATTCAAGAAGCAATTTGCTCATCTTGAGGAAACTGGTGGCAAAAGTAGTCCAGTTCTGCCACCTGAAAGAAAGCATGTATCACTTCCCAGGTCAACAATTATACATTCAAATACAGTACCCACAAAAGAGCAATCAAATATTGTTTCCAGCAAAATCAGGCAAACAGCTGAGGAATACAGCAATAATTCTAGGGATACAGAAAATCCTGCGCCAAGGTCCATTCAGGGTCTGCAAAAATTTTCACATGCAAAACCTGGTAAAGTTGTTGGGCCGGTTATTCCATACGAGTATGCAAGTGTTGTCAAGGGTTCATACGAGCCCAGGACATTTATGAGAGGTTCTGTTCCTCCTTCTCAACCCACTCCCCCGACGAACCATTATCAAAGATTAACCTCTGGGAAACAAGAAAGGTCAGCAACAGAAGCTGAGAAGTGTGTATCTTTACAATCAAAACTTGCACAGCAATGTTGTGTGAATGGCCAAATAGCACCAGAAATAGCTATAAATATTGATTCCAACCCTTTTTTCATGACACGAGCAGGAGTGAACAGGATAGAGCAGGATGACCGAATAGCCATTGATACAAAGATGCTGCAAACAAAAGCTCATCAATATGGTGGGATTAGTACAACTGCTCATAGAAAGGTTGGACCAGTACAGTATGGTATTACAAGGTTGTTCTAG 1836 0.4047 MQQDHRKKGSMEMEFFSDYGDANRYKIQEVIGKGSYGVVCSAIDTHTGEKVAIKKIHDIFEHVSDTARILREIKLLRLLRHPDIVEIKHVMLPPSRRDFKDIYVVFELMESDLHQVIKANDDLTKEHYQFFLYQLLRALKYIHTANVYHRDLKPKNILANANCKLKICDFGLARVAFSDTPTTVFWTDYVATRWYRAPELCGSFYSRYTPAIDIWSIGCIFAEVLIGKPLFPGKNVVHQLDLMTDLLGTPSLDTISRVRNDKARRYLTSMRKKQPIPFAQKFPNADPLALRLLEKLLAFDPKDRPTAEEALADPYFKGLAKVEREPSCQPITKMEFEFERRRVTKEEIGELIFREILEYHPQLLKDYINGTERTNFLYPSAVDQFKKQFAHLEETGGKSSPVLPPERKHVSLPRSTIIHSNTVPTKEQSNIVSSKIRQTAEEYSNNSRDTENPAPRSIQGLQKFSHAKPGKVVGPVIPYEYASVVKGSYEPRTFMRGSVPPSQPTPPTNHYQRLTSGKQERSATEAEKCVSLQSKLAQQCCVNGQIAPEIAINIDSNPFFMTRAGVNRIEQDDRIAIDTKMLQTKAHQYGGISTTAHRKVGPVQYGITRLF* 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0291 611 ProSiteProfiles Protein kinase domain profile. 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g0291 611 Gene3D Transferase(Phosphotransferase) domain 1 111 339 - -
Vra6g0291 611 SMART serkin_6 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g0291 611 Gene3D Phosphorylase Kinase; domain 1 40 362 - -
Vra6g0291 611 MobiDBLite consensus disorder prediction 496 520 - -
Vra6g0291 611 MobiDBLite consensus disorder prediction 416 456 - -
Vra6g0291 611 Pfam Protein kinase domain 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g0291 611 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 9 494 - -
Vra6g0291 611 SUPERFAMILY Protein kinase-like (PK-like) 21 320 IPR011009 -
Vra6g0291 611 ProSitePatterns Protein kinases ATP-binding region signature. 31 55 IPR017441 GO:0005524
Vra6g0291 611 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 9 494 - -
Vra6g0291 611 CDD STKc_TDY_MAPK 24 361 - -
Vra6g0291 611 ProSitePatterns MAP kinase signature. 60 163 IPR003527 GO:0004707|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0291 Vra-Chr6 2165551 2171389 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0291 1 434 MAP Kinase Gene Family AT2G42880 87.558 0.0 795
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Vra6g0291 Pkinase 5.8e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0291 - - gmx:100811788 1058.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0291 6 2165551 2171389 Vra6g0291 6 2165551 2171389 PCT