Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0287 ATGAATTTCTCAGTTTCTTTCATTTTCTTGAGGCACGAGCAATGCTGCAAAGACAAAGGAAAGCTGCCACCAGGGGAAATGGGGTTTCCACTGATAGGGGAGACCATGGAATTCTTCAATGCTCAGAGGAGAAACAAGTTATTTGAAGAGTTTTTTCATCCCCGAATTCTGAAACATGGGAAGATCTTCAGAACAAGGATCATGGGGTCTCCAACTGTGGTTGTGAATGGAGCTGAGGCCAATAAATTCTTACTGTCCAATGAGTTCAAGTTGGTGAAAAGCTCTTGGCCTTCTTCATCAGTTGAGCTCATGGGAAGGGACTCTATCATGGAGAAAGATGGTGAAAGGCACCGGTTCCTCCGTGGTGTCATTGCCACAAGCCTTGGTTATGCTGGACTTGAGCTACTGGTTCCAAGATTATGCAACTCTGTTCAGTTTCATTTAGCTACAAACTGGAAGGGCCAAGAGAATATCAGTATTCACCGTTCAACAAAAGTCCTCACTTTTAGCATAGTGTTTGAGTGTTTGTTGGGAATCAAAGTGGAGCCAGGTATGTTAGATACCTTTGAAAGAGTGTTGGAAGGAGTGTTTTCCCCAGCAGTTATGTTTCCAGGTACTAAATTTTGGAGGGCAAAGAAGGCCAGGGTGGAGATAGAAAAGATGTTAATAAAAGTGGTGAGAGAGAAGAAAAAGGAAATGGAAGGAAGCTCAGAAAGAGAACAAGATGGAATGCTGCTGTCCAATTTGGTATGTGGGATGATCCAAGGGGAGATAAGTGAAAAAGAAGTCATAGACAATGTCGTGTTACTAGTTTTTGCAGCTCATGATACCACTTCTTTTGCTGTTGCTATGACATTCAAGATGTTGTCTCAGCATCCTGACTGCTACGGAAAAATTCTTCAAGAACATGTTGCCATAAGGAGAACCAAAAAGCGGGGTGAGAATCTGACAATGGAGGATATAAAAAAGATGAAGTATACATGGCAAGTTGCGAGAGAAAGCATGAGATTGTTCCCTCCTATCTTTGGTTCTTTCAGAAAGGCTATCACTGATATTGAATATGAAGGATTCGTGATTCCTAGAGGATGGAAGATGCTATGGACAACATACGGGACACATTACAATGAAGAATATTTCAAGGATGCTATGAATTTCAACCCAAGTAGGTTTGAGGAGGGAGTACCCCAATATGCATATGTTCCCTTTGGAGGAGGACCAAGAGTTTGTGCAGGTTACCAATTAGCCAAGTTAAACATCCTCGTATTTGTGCACTATGTTGTGACACAATATGAGTGGTTCTTACTTCATCCAGATGAACCTGTGACAATGGATCCCTTGCCTTTCCCTTCCCTCGGAATGCCCATCAGAATTTCTCCCAAACATGCATAA 1389 0.4219 MNFSVSFIFLRHEQCCKDKGKLPPGEMGFPLIGETMEFFNAQRRNKLFEEFFHPRILKHGKIFRTRIMGSPTVVVNGAEANKFLLSNEFKLVKSSWPSSSVELMGRDSIMEKDGERHRFLRGVIATSLGYAGLELLVPRLCNSVQFHLATNWKGQENISIHRSTKVLTFSIVFECLLGIKVEPGMLDTFERVLEGVFSPAVMFPGTKFWRAKKARVEIEKMLIKVVREKKKEMEGSSEREQDGMLLSNLVCGMIQGEISEKEVIDNVVLLVFAAHDTTSFAVAMTFKMLSQHPDCYGKILQEHVAIRRTKKRGENLTMEDIKKMKYTWQVARESMRLFPPIFGSFRKAITDIEYEGFVIPRGWKMLWTTYGTHYNEEYFKDAMNFNPSRFEEGVPQYAYVPFGGGPRVCAGYQLAKLNILVFVHYVVTQYEWFLLHPDEPVTMDPLPFPSLGMPIRISPKHA* 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0287 462 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 402 411 IPR017972 GO:0005506|GO:0016705
Vra6g0287 462 PANTHER TAXADIENE 5-ALPHA HYDROXYLASE 15 459 - -
Vra6g0287 462 SUPERFAMILY Cytochrome P450 20 459 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra6g0287 462 PRINTS P450 superfamily signature 273 290 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra6g0287 462 PRINTS P450 superfamily signature 329 340 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra6g0287 462 PRINTS P450 superfamily signature 400 409 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra6g0287 462 PRINTS P450 superfamily signature 409 420 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra6g0287 462 PANTHER CYTOCHROME P450 26 15 459 - -
Vra6g0287 462 Pfam Cytochrome P450 23 453 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra6g0287 462 Gene3D Cytochrome P450 12 459 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra6g0287 462 PRINTS E-class P450 group I signature 56 75 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra6g0287 462 PRINTS E-class P450 group I signature 262 279 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra6g0287 462 PRINTS E-class P450 group I signature 368 392 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra6g0287 462 PRINTS E-class P450 group I signature 399 409 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra6g0287 462 PRINTS E-class P450 group I signature 409 432 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0287 Vra-Chr6 2141303 2143646 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0287 22 365 Cytochrome P450 AT2G42850 64.244 1.87e-157 449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0287 - - gmx:100793336 862.448