Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0283 ATGGAGTTTCCGAACGAAGCAATATCAGAAGGGTGTTCTCAGAAGAAAAGTGGAAGAGGGAAAATAGAGATCAAGCGGATCGAGAACACCACCAATCGCCAAGTTACCTTCTGCAAACGTCGCAACGGGTTGCTCAAGAAGGCTTATGAATTGTCTGTTCTCTGTGATGCCGAAGTTGCTCTTGTTGTCTTCTCAAGCCGTGGACGCCTTTATGAGTATGCAAACAACAGTGTTAGAGGAACTATCGATAGGTACAAGAAAGCATGCGCTGCTTCCACAAATGCAGAATCTGTCTCTGAAGCTAATACACAGTTTTATCAGCAAGAATCATCCAAGTTAAAAAGACAAATCAGAGACATTCAGAATCTAAACAGGCACATCCTTGGTGAAGCTCTTAGTTCTCTAAGTCTAAAGGAATTAAAGAATCTTGAGAGTAGATTGGAGAAAGGTTTGAGCAGAGTCAGATCCAGAAAGCATGAGACATTGTTTGCGGATATCGAATTTATGCAAAAGCGGGAAATAGAGCTGCAAAACCACAATAACTTTCTGCGAGCTAAGATAGCTGAACACGATAGAGAAGAACAACAACAGCAACATATGACAGGAAATGTGTGCGAGTCCTTACCAGCTTCACAGACATATGACAGGAATTTCTTCCCTGTAAACCTCATAGATTCCAGTCATCAATACTCACGTCAAGACCACACTGCTCTTCAACTTGTCTGA 726 0.4201 MEFPNEAISEGCSQKKSGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYANNSVRGTIDRYKKACAASTNAESVSEANTQFYQQESSKLKRQIRDIQNLNRHILGEALSSLSLKELKNLESRLEKGLSRVRSRKHETLFADIEFMQKREIELQNHNNFLRAKIAEHDREEQQQQHMTGNVCESLPASQTYDRNFFPVNLIDSSHQYSRQDHTALQLV* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0283 241 SUPERFAMILY SRF-like 18 94 IPR036879 GO:0003677|GO:0046983
Vra6g0283 241 SMART madsneu2 17 76 IPR002100 GO:0003677|GO:0046983
Vra6g0283 241 ProSiteProfiles K-box domain profile. 103 193 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vra6g0283 241 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL1-RELATED 14 235 - -
Vra6g0283 241 Coils Coil 106 126 - -
Vra6g0283 241 ProSitePatterns MADS-box domain signature. 19 73 IPR002100 GO:0003677|GO:0046983
Vra6g0283 241 PRINTS MADS domain signature 19 39 IPR002100 GO:0003677|GO:0046983
Vra6g0283 241 PRINTS MADS domain signature 39 54 IPR002100 GO:0003677|GO:0046983
Vra6g0283 241 PRINTS MADS domain signature 54 75 IPR002100 GO:0003677|GO:0046983
Vra6g0283 241 CDD MADS_MEF2_like 18 92 IPR033896 GO:0000977|GO:0045944
Vra6g0283 241 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 26 73 IPR002100 GO:0003677|GO:0046983
Vra6g0283 241 ProSiteProfiles MADS-box domain profile. 17 77 IPR002100 GO:0003677|GO:0046983
Vra6g0283 241 Pfam K-box region 101 187 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vra6g0283 241 PANTHER MADS BOX PROTEIN 14 235 - -
Vra6g0283 241 Gene3D - 29 99 IPR036879 GO:0003677|GO:0046983
Vra6g0283 241 Coils Coil 137 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0283 Vra-Chr6 2102611 2107926 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0283 13 241 MADS-box Gene Family AT3G58780 69.198 7.87e-115 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vra6g0283 K-box 2.3e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0283 K09264 - gmx:100792224 421.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g0224 10 6355669 6362304 Vra6g0283 6 2102611 2107926 PCT