Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0280 ATGGAAACCAAGAAGCTTCAGCTTCGCTTCTCGCTCGGCCGGCAATCCTCCCTAGCGCCGGAGCGCGACGGCGCGGGCGACGTGTCGGAGGCGCTGGATCCGACGGTTCGGTTGATGTATCTGGCCAACGAAGGAGACTTGGACGGGATCGAGGAACTGCTGGACGCGGGGAGCGACGTCAATTTCACCGACATTGACGGCCGAACCGCGCTCCACGTCGCCGCCTGCCAGGGACGCACCGACGTTGTTGACCTGCTGCTCCGACGAGGCGCTGAAGTTGATCCGCGAGACCGCTGGGGCAGCACCCCTCTAGCTGATGCAATGTACTACAAAAACCACGACATCGTGAAGCTTTTGGAGAAACACGGTGCAAAACCTCCAATAACTCCCATGCATGTGGAGAATGCTCGAGAAGTCCCAGAGTATGAGATTGATCCTTCTGAACTCGATTTTACTAATAGTGTTGGGATAACAAAGGGAACTTTCCGGATTGCATTATGGCGTGGAACTCGGGTTGCTGTCAAGACACTTGGGGAGGAAGTGTTCACTGATGATGATAAAGTAAAAGCATTTCATGATGAGCTTACATTGCTTGAGAAAATAAGGCATCCAAATGTAGTTCAGTTTTTGGGTGCTGTAACCCAAAGCACCCCAATGATTATCGTCACAGAATATCTACCCCAGGGGGATCTTCGTGCCTACTTGAAGCGGAAAGGTGCATTAAAACCAGTAACAGCTGTAAAATTTGCACTTGATATTGCTAGGGGTATGAACTATTTGCACGAACATAAACCTGAAGCCATTATACACCGAGATCTTGAGCCTTCAAATATTTTGCGGGATGATTCTGGGCATCTGAAAGTTGCAGACTTTGGAGTTAGCAAATTGCTTAAAGTCGCTAAAACAGTCAAGGAAGACAAACCCGTGACAAGCCTGGATACATCATGGCGATACGTTGCACCAGAAGTCTATAGAAATGAGGAATATGATACAAAAGTGGATGTGTTTTCTTTTGCTTTGATATTACAGGAGATGATTGAAGGTTGTCCACCGTTCTATGAAAAACCAGAAAACGAAGTTCCTAAAGCGTATGTTGAAAACGAGCGCCCACCATTTAGAGCGTTGCCAAAGCTTTATGCTTATGGACTAAAACAGTTAATTGAGGAATGCTGGGATGAAAAACCACACAGAAGGCCAACATTTAGGCAAATAATTGGGAGATTGGAAGACATTAACAGCCATCTTGTACAAAAGAAGCGCTGGAAGATTGGAGCTTCTGGATGCATCCAGCACCTGGAGGCCCTATTTAGGGGTAATCGCACAAGTCCAAGTAGCCGATCATCTCGCTCCACGGCCAGATAA 1362 0.4772 METKKLQLRFSLGRQSSLAPERDGAGDVSEALDPTVRLMYLANEGDLDGIEELLDAGSDVNFTDIDGRTALHVAACQGRTDVVDLLLRRGAEVDPRDRWGSTPLADAMYYKNHDIVKLLEKHGAKPPITPMHVENAREVPEYEIDPSELDFTNSVGITKGTFRIALWRGTRVAVKTLGEEVFTDDDKVKAFHDELTLLEKIRHPNVVQFLGAVTQSTPMIIVTEYLPQGDLRAYLKRKGALKPVTAVKFALDIARGMNYLHEHKPEAIIHRDLEPSNILRDDSGHLKVADFGVSKLLKVAKTVKEDKPVTSLDTSWRYVAPEVYRNEEYDTKVDVFSFALILQEMIEGCPPFYEKPENEVPKAYVENERPPFRALPKLYAYGLKQLIEECWDEKPHRRPTFRQIIGRLEDINSHLVQKKRWKIGASGCIQHLEALFRGNRTSPSSRSSRSTAR* 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0280 453 CDD STKc_MAP3K-like 165 408 - -
Vra6g0280 453 Pfam Ankyrin repeats (3 copies) 38 126 IPR002110 GO:0005515
Vra6g0280 453 ProSiteProfiles Ankyrin repeat region circular profile. 66 98 - -
Vra6g0280 453 PIRSF ILK 2 429 - -
Vra6g0280 453 Gene3D Phosphorylase Kinase; domain 1 143 226 - -
Vra6g0280 453 SUPERFAMILY Protein kinase-like (PK-like) 161 408 IPR011009 -
Vra6g0280 453 PANTHER INTEGRIN-LINKED KINASE FAMILY PROTEIN 10 436 - -
Vra6g0280 453 ProSiteProfiles Protein kinase domain profile. 144 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g0280 453 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 10 436 - -
Vra6g0280 453 ProSiteProfiles Ankyrin repeat profile. 66 98 IPR002110 GO:0005515
Vra6g0280 453 SMART ANK_2a 66 95 IPR002110 GO:0005515
Vra6g0280 453 SMART ANK_2a 32 62 IPR002110 GO:0005515
Vra6g0280 453 SMART ANK_2a 99 128 IPR002110 GO:0005515
Vra6g0280 453 Gene3D - 3 142 IPR036770 -
Vra6g0280 453 SUPERFAMILY Ankyrin repeat 37 129 IPR036770 -
Vra6g0280 453 Pfam Protein tyrosine and serine/threonine kinase 169 407 IPR001245 GO:0004672|GO:0006468
Vra6g0280 453 Gene3D Transferase(Phosphotransferase) domain 1 227 427 - -
Vra6g0280 453 PRINTS Tyrosine kinase catalytic domain signature 223 236 IPR001245 GO:0004672|GO:0006468
Vra6g0280 453 PRINTS Tyrosine kinase catalytic domain signature 262 280 IPR001245 GO:0004672|GO:0006468
Vra6g0280 453 PRINTS Tyrosine kinase catalytic domain signature 333 355 IPR001245 GO:0004672|GO:0006468
Vra6g0280 453 PRINTS Tyrosine kinase catalytic domain signature 379 401 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0280 Vra-Chr6 2066693 2072377 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0280 1 426 MAP Kinase Kinase Kinase AT4G18950 65.747 0.0 580
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-5 Vra6g0280 PK_Tyr_Ser-Thr 5.3e-54 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0280 - - gmx:100795964 822.772
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0280 6 2066693 2072377 Vra5g0918 5 15475043 15482779 PCT