Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0276 ATGGAGCCCAATTTGGGATATTTCAGGGTCTTCCGTTTACTCTTCCTTGCTTCAACTTCATTGGTTTTCCTCTCACACTGGGCTTCTGCTGCCACTCCCAAGCTCAACAACCAAGAGATGAAGGCACTGAAGGATATAGGGAGCAAGATTGGAAAGAAAGATTGGGACTTTGGAGTGGATCCTTGCAGTGGAAAAGGGAGTTGGAATGTTTCTGATGATAGGAAAGGCTTTCAGAGCTCTGTGATGTGTGATTGTTCTTTCAATAACAATACTTCTTGCCATGTTGTAAGCATATTCTTGAAGGGTCAGAATCTGTCTGGTACTCTCTCACCAATGTTTTCCAAGCTTCAGTATCTCACGATATTAGACCTCAGTCGTAACATCATCACTGGTTCTATACCTCAACAGTGGAGTTCCATGGGCTTGGTTGAGATCTCTTTCATGGGAAACAAATTATCAGGGCCATTCCCCAAAGTTCTCACCAATATCACAACCCTCAGAAACTTGAGTATTGAAGGAAACCTATTTTGGGGCCACATTCCAACGGAGATTGAGAAGTTGGTCAATTTAGAAAAACTCATTCTATCATCCAATGGATTCACAGGAGCATTGCCACCCTCACTTTCCAAGTTGACCAAGTTGATTGATTTGAGGATAAGCGACAATAATTTCTTTGGGAAGATACCTGATTTCATTAGTAACTGGACAGTGATAGAAAAGCTGCATATGCACGGTTGTTCTCTTGAGGGGCCAATACCTTCTAGCATTTCTGCCTTGACAAGATTAAGTGATTTGAGGATAACTGACCTAAAAGGTGATAAAACCTCAGCTTTCCCACCACTAAATAACATGAAATCCATGAAGACATTGGTATTAAGAAGATGCATGATTAAAGGAGAAATCCCAGAATATATTGGGAGAATGGAAAAACTGAAAATCTTAGATTTGAGTTACAATAACTTGAGTGGAGAGATACCTGAATCTTTTGCCGAACTTGACAAAGTAGACTTCATGTATCTTACTGGGAACAATTTATCCGGGACTATACCTGGCTGGGTCCTTGGAAATAACAAAAACATTGATGTCTCTAACAATAATTTCTCCTGGGATAGCTCAAGTCCAACTGAATGTCAACGAGGGAGCATAAACCTTGCTGAAAGCTACTCTTCATCTGTAGATACACAAAATAAGATTCATTCATGCTTAAAAAGGAACTTCCCATGTCCTGCTTCAGTTAGCAAATATCAGTACGCCTTGAACATTAATTGTGGTGGTAAGGAAGCAAATATCAGTGGTCATATTTATGAAGCTGACGTTGAACGAAAAGGTGCTGCAATGTTATATACTGGTCAGGTTTGGGCTCTGAGCAGCACTGGAAACTTCATGGACAATGACATTGACTCTGATCCATACATTGTGGCCAATACTTCTAGACTTAATAATGTCTCTGCACTCAGCTCACAACTATACACAACTGCTCGTGTTTCTCCCCTTGCTCTCACATACTATGGCCTCTGCCTAATAAATGGAAATTACACAATCAAGCTTCACTTTGCAGAGATTATTTTCATCAATGATAGGTCACTTAATAGTCTTGGAAAGAGGGTATTTGACGTCTATATCCAGGGGAATTTAGTGTTGAAAGACTTTGATATCCAAAGAGAAGCTGGTGGTACTGGCAAGCCAATTGTGAAGACATTCAATGCTACTGTCACCCAACATACTTTGAAGATTCACTTCTACTGGGCTGGAAAAGGAACCACTGGCATTCCCACAAGAGGAGTTTATGGACCACTAGTGTCTGCTATTTCAGTAAGCCCTAATTTTAAACCTCCATCAGGGAAGGATGACAACAGAACTGATGTCATACTGGCAATTGGCATAGTTGCTGGTGTTTTAGTTCTTCTACTTCTGGGGCTGGTTTTTATGAGGTGGATGGGATGGTTAGGAGGTAAAGATCCAGTGTATAAAGAGCTTAGGGGTATCGATCTGCAGACGGGATTATTTACACTAAGACAAATCAAAGCAGCGACCAAAAACTTTGATGCAACAAACAAAATTGGCGAAGGTGGCTTTGGTTGTGTTTACAAGGGCCTACTGTCAGATGGTACAATAATAGCAGTAAAGCAGCTGTCTTCAAAATCCAAACAAGGAAACCGTGAGTTTGTGAACGAGATGGGATTGATATCTGGACTCCAACATCCCAATCTTGTTAAGCTTTATGGATGTTGTGTGGAGGGGAACCAGCTAATACTGATATATGAGTACATGGAAAATAATTGTCTATCTCGGATTCTTTTTGGGAGGAATCCAGAGAGCAGAATAAAACTAGACTGGCCAACAAGGAAGAAAATTTGTCTTGGTATAGCTAAAGCTTTGGCTTACCTTCATGAAGAGTCCAGAATAAAAATCATACATAGGGATATAAAGGCAAGTAATGTATTGCTCGACAAGGATTTTAATGCTAAAGTTTCAGATTTTGGCTTGGCAAAACTTATTGAAGATGACAAAACCCATATTAGCACTCGAGTAGCAGGAACAATTGGTTACATGGCTCCTGAGTATGCAATGCGCGGCTATCTAACTGACAAAGCAGATGTTTATAGCTTTGGGGTGGTTGCACTGGAAACTGTCAGCGGAAAGAGCAATACAAATTTCAGGCCAAACGAGGATTTTGTTTATCTTCTTGATTGGGCCTATGTTTTGCAAGAGAGAGGGAGTCTTCTGGAGCTGGTTGACCCAGATTTGGGTTCAGAATATTCAACTGAGGAGGCCATGGTGGTGCTAAATGTGGCCCTCTTATGTACCAATGCATCTCCTACACTTAGGCCAACAATGTCCCAAGCTGTGAGCATGCTTGAAGGTTGGACTGATATTCAGGATCTACTTTCTGATCCGGGATATTCAGCTGTTAGTTCCAGTTCCAAATATAAGAGTATAAGAAATCACTTCTGGCAGAATCCTAGTAGAACACATAGCATGTCAATACCTAGTGTATATACTGATTCCTCTGGCTCTCATGTTGAAACAGAAAAGAGCTATCGTCTTGTAACAACAGTTAATTCGGATGGATCAGACAAGTCAAACTAG 3090 0.4078 MEPNLGYFRVFRLLFLASTSLVFLSHWASAATPKLNNQEMKALKDIGSKIGKKDWDFGVDPCSGKGSWNVSDDRKGFQSSVMCDCSFNNNTSCHVVSIFLKGQNLSGTLSPMFSKLQYLTILDLSRNIITGSIPQQWSSMGLVEISFMGNKLSGPFPKVLTNITTLRNLSIEGNLFWGHIPTEIEKLVNLEKLILSSNGFTGALPPSLSKLTKLIDLRISDNNFFGKIPDFISNWTVIEKLHMHGCSLEGPIPSSISALTRLSDLRITDLKGDKTSAFPPLNNMKSMKTLVLRRCMIKGEIPEYIGRMEKLKILDLSYNNLSGEIPESFAELDKVDFMYLTGNNLSGTIPGWVLGNNKNIDVSNNNFSWDSSSPTECQRGSINLAESYSSSVDTQNKIHSCLKRNFPCPASVSKYQYALNINCGGKEANISGHIYEADVERKGAAMLYTGQVWALSSTGNFMDNDIDSDPYIVANTSRLNNVSALSSQLYTTARVSPLALTYYGLCLINGNYTIKLHFAEIIFINDRSLNSLGKRVFDVYIQGNLVLKDFDIQREAGGTGKPIVKTFNATVTQHTLKIHFYWAGKGTTGIPTRGVYGPLVSAISVSPNFKPPSGKDDNRTDVILAIGIVAGVLVLLLLGLVFMRWMGWLGGKDPVYKELRGIDLQTGLFTLRQIKAATKNFDATNKIGEGGFGCVYKGLLSDGTIIAVKQLSSKSKQGNREFVNEMGLISGLQHPNLVKLYGCCVEGNQLILIYEYMENNCLSRILFGRNPESRIKLDWPTRKKICLGIAKALAYLHEESRIKIIHRDIKASNVLLDKDFNAKVSDFGLAKLIEDDKTHISTRVAGTIGYMAPEYAMRGYLTDKADVYSFGVVALETVSGKSNTNFRPNEDFVYLLDWAYVLQERGSLLELVDPDLGSEYSTEEAMVVLNVALLCTNASPTLRPTMSQAVSMLEGWTDIQDLLSDPGYSAVSSSSKYKSIRNHFWQNPSRTHSMSIPSVYTDSSGSHVETEKSYRLVTTVNSDGSDKSN* 1030
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0276 1029 Pfam Leucine rich repeat 287 345 IPR001611 GO:0005515
Vra6g0276 1029 Gene3D Phosphorylase Kinase; domain 1 655 756 - -
Vra6g0276 1029 Gene3D Transferase(Phosphotransferase) domain 1 757 965 - -
Vra6g0276 1029 ProSitePatterns Serine/Threonine protein kinases active-site signature. 804 816 IPR008271 GO:0004672|GO:0006468
Vra6g0276 1029 PANTHER LEUCINE-RICH REPEAT TRANSMEMBRANE PROTEIN KINASE-RELATED 71 997 - -
Vra6g0276 1029 SUPERFAMILY L domain-like 83 368 - -
Vra6g0276 1029 SMART serkin_6 681 957 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g0276 1029 Pfam Malectin domain 418 603 IPR021720 -
Vra6g0276 1029 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 71 997 - -
Vra6g0276 1029 Gene3D Ribonuclease Inhibitor 273 380 IPR032675 -
Vra6g0276 1029 Gene3D - 414 608 - -
Vra6g0276 1029 ProSiteProfiles Protein kinase domain profile. 681 957 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g0276 1029 Pfam Protein tyrosine and serine/threonine kinase 684 951 IPR001245 GO:0004672|GO:0006468
Vra6g0276 1029 CDD STKc_IRAK 687 955 - -
Vra6g0276 1029 SUPERFAMILY Protein kinase-like (PK-like) 665 983 IPR011009 -
Vra6g0276 1029 Gene3D Ribonuclease Inhibitor 36 272 IPR032675 -
Vra6g0276 1029 ProSitePatterns Protein kinases ATP-binding region signature. 687 709 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0276 Vra-Chr6 2039818 2049751 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0276 217 1017 Receptor kinase-like Gene Family AT1G07650 66.047 0.0 1032
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vra6g0276 PK_Tyr_Ser-Thr 2.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0276 - - vun:114195543 1939.08