Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0274 ATGGTTCAACAAAGTAATGTAGCTCCCCTATCATCCACCCCACTTTCTTCCTCCGATGACAATACCTTTAATGATGTTATCGATTCTTCCACTCATCCAAAATCCCCCTCCTCCTCATCATCATCAAAGAGGACACGGGGTAGGCCTGTGGGCTCCAAGAACAAACCAAAATTAACCCTTGTGATTGACCAAGACAACAAGCATACCCAAAAACCTATTTTCATTCAAATCCCTAAAAATTCTGATGTGATTAAGGCACTGATCCAATTCTCCTATGATTACCAAAGTAGCATCACAGTGCACAGTGCATCAGGATCTATTAGGAACGTCACTCTCCGTGATAATGAATCCATAACTTCTGCTTTCATTGTTCATGGACCCTTCACATTAGTTTCCCTCATTGGCACTTGCATAAATAACAACTCTTGTACTATTTCATCATTGTCTAATCTTGACATTGGTTGTTTTTTTAACATTTCCTTTTGCTCAAATATAGGTCAAAGCTTTATTGGAGTTGTTGGAGGGAAAGTTATCGCAGATGATGATGTTATTGTAGCTGTTACTGTTTTCAATAACTCTGAGAATAACAAAGGTGAAAACCAATTATGA 609 0.3842 MVQQSNVAPLSSTPLSSSDDNTFNDVIDSSTHPKSPSSSSSSKRTRGRPVGSKNKPKLTLVIDQDNKHTQKPIFIQIPKNSDVIKALIQFSYDYQSSITVHSASGSIRNVTLRDNESITSAFIVHGPFTLVSLIGTCINNNSCTISSLSNLDIGCFFNISFCSNIGQSFIGVVGGKVIADDDVIVAVTVFNNSENNKGENQL* 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0274 202 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 22 194 IPR014476 GO:0003680
Vra6g0274 202 MobiDBLite consensus disorder prediction 1 62 - -
Vra6g0274 202 SUPERFAMILY AF0104/ALDC/Ptd012-like 70 193 - -
Vra6g0274 202 CDD DUF296 71 190 IPR005175 -
Vra6g0274 202 MobiDBLite consensus disorder prediction 1 47 - -
Vra6g0274 202 Pfam Plants and Prokaryotes Conserved (PCC) domain 71 191 IPR005175 -
Vra6g0274 202 Gene3D - 71 198 - -
Vra6g0274 202 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 22 194 - -
Vra6g0274 202 ProSiteProfiles PPC domain profile profile. 67 193 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0274 Vra-Chr6 2025162 2025770 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0274 43 197 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 34.395 5.01e-21 86.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0274 - - var:108336502 301.982