Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0271 ATGATTTGCACGGTGAAACAGCCCGCCATATCGATCGGAGCCTCTGATGTTTTGCTATGGAAAAAGGGTTCAACTTTAGCCTCAGCTCAGTCATGTTCCCTTGTTGTCTCTTCTTCCCACCCAAGGGAAAAGACTGTGAGATCTCTTTTGTCAGTGCAAAAGCCACTGCACCTTTCATGTGTGGGGTTGGGAAATTTTGTTAGGTCTCCGGTGAGGCGTGAACGTGGTGGTGATCTGGGGACATGTAGGGCCTATGAGGCTCAGAGACCGGAGGTGGAAGGGGCTGATCCATCAGAGGCTGCTAAGAAGGTGAAAATTGGTATATACTTTGCAACCTGGTGGGCTCTGAATGTGGTGTTCAATATTTATAACAAGAAGGTGCTGAATGCGTACCCCTACCCTTGGCTTACCTCAACACTCTCCCTTGCATGTGGGTCTCTCATGATGTTGATCTCTTGGGCCACCAGGATAGCCGAGCCTCCTAAGACCGATCTTGAGTTCTGGAAGAATTTGTTACCTGTTGCTGTCGCACATACAATAGGACATGTAGCGGCAACTGTTAGCATGTCAAAAGTTGCAGTATCATTCACCCACATCATAAAGAGTGGTGAACCAGCTTTCAGTGTTCTTGTTTCCAGATTTCTTCTGGGTGAGACCTTCCCGGTGCCAGTCTATCTGTCCTTAATTCCTATCATTGGTGGATGTGCACTTGCAGCTGTTACTGAGCTAAACTTCAACATGATTGGTTTTATGGGGGCTATGATATCGAATTTGGCATTCGTGTTCCGTAACATATTTTCAAAGAAGGGCATGAAAGGAAAGGCTGTTAGTGGAATGAACTACTATGCGTGTTTATCTATGTTGTCTCTTGTAATACTCACACCTTTTGCGATTGCTGTGGAGGGACCACAGATGTGGGCAGCTGGATGGCAAGCAGCACTCTCTCAAATTGGACCTCAATTTATATGGTGGGTGGCAGCTCAGAGTATATTCTATCACCTGTATAATCAGGTGTCATACATGTCTCTGGATGAGATATCTCCTTTGACATTTAGCATTGGAAACACCATGAAACGTATATCTGTTATAGTTTCTTCAATCATCATCTTCCACACACCAGTTCAGCCTGTTAACGCTCTTGGAGCTGCTATTGCCATCCTCGGAACCTTCTTGTATTCACAGTCAAAGCAGTAG 1194 0.4556 MICTVKQPAISIGASDVLLWKKGSTLASAQSCSLVVSSSHPREKTVRSLLSVQKPLHLSCVGLGNFVRSPVRRERGGDLGTCRAYEAQRPEVEGADPSEAAKKVKIGIYFATWWALNVVFNIYNKKVLNAYPYPWLTSTLSLACGSLMMLISWATRIAEPPKTDLEFWKNLLPVAVAHTIGHVAATVSMSKVAVSFTHIIKSGEPAFSVLVSRFLLGETFPVPVYLSLIPIIGGCALAAVTELNFNMIGFMGAMISNLAFVFRNIFSKKGMKGKAVSGMNYYACLSMLSLVILTPFAIAVEGPQMWAAGWQAALSQIGPQFIWWVAAQSIFYHLYNQVSYMSLDEISPLTFSIGNTMKRISVIVSSIIIFHTPVQPVNALGAAIAILGTFLYSQSKQ* 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0271 397 SUPERFAMILY Multidrug resistance efflux transporter EmrE 147 240 - -
Vra6g0271 397 Pfam Triose-phosphate Transporter family 105 393 IPR004853 -
Vra6g0271 397 PANTHER GLUCOSE-6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 2, CHLOROPLASTIC 37 396 - -
Vra6g0271 397 PANTHER SOLUTE CARRIER FAMILY 35 37 396 - -
Vra6g0271 397 TIGRFAM tpt: Tpt phosphate/phosphoenolpyruvate translocator 105 396 IPR004696 GO:0016021|GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0271 Vra-Chr6 2004774 2008068 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0271 36 396 Antiporters AT5G54800 80.000 0.0 560
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0271 K15283 - gmx:100787351 639.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0271 6 2004774 2008068 Vra6g0271 6 2004774 2008068 ECH
Vra10g0029 10 1486346 1490863 Vra6g0271 6 2004774 2008068 PCT