Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0266 ATGAGTTTCTTTTCATGTTGCACATCATCTGAGAAGATCAACAAGAACTCCTTCAGAGGGAGCAGCAGGGACTTCAATCATGCAAAATCTATGCCATCATGTGGTACCATGTGTTTTAAACCTGATAACAGCAAGAGGAAGTTCATAGAACAAGAAATTGCAAAGATTGGAAGAGGGAATATTACCTCTCAGACTTTTTCTTATCATGAGCTATGTGTTGCAACTGGGAATTTTCACCCTGAGAACATGATTGGTGAAGGAGGCTTTGGAAGGGTGTATAAAGGACGCATTAAAAGCATAAACAAGGTTGTTGCTGTGAAGAAACTTAACAGGAATGGATTCCAAGGAAACAGGGAATTTCTTGTAGAGGTTTTGATTTTGAGTCTCTTGCACCACCCTAACCTTGTTAATTTGGTAGGGTATTGTGCAGATGGTGAACAAAGGATTTTGGTATACGAATACATGGTGAATGGTTCTTTAGAAGATCACCTTCTTGAACTACCTGAGGACAGAAAGCCTTTGGATTGGCAAACCAGAATGAACATAGCAGCAGGTGCAGCTAAAGGACTTGAATACTTGCATGAGGTAGCAAATCCACCAGTGATATACCGTGATTTCAAATCATCAAACATACTATTGGATGAAAACTTCAATCCAAAGCTCTCTGATTTTGGACTTGCAAAGCTTGGTCCAACTGGTGATAAAACTCATGTATCCACCAGGGTGATGGGAACTTATGGCTATTGTGCTCCTGAGTATGCCTCAACAGGCCAATTGACTACAAAATCAGATATATACAGCTTCGGAGTGGTATTTCTAGAGATGATCACAGGAAGAAGAGTACTTGATCAATCAAGATCATCTGAGGAGCAAAACTTAGTCACTTGGGCACAACCACTATTCAAAGACAGAAGGAAGTTTACATCAATGGCTGATCCATTGCTGAAAGGGAACTACCCAGCAAAGGGTCTACACCAAGCACTAGCAGTTGCAGCAATGTGCCTTCAGGAGGAAGCACATACTCGACCTTTGATCAGTGACGTGGTTACAGCCATTGATGTTTTAGCCAAGACGCAGATGCAAGTGGGAAAACAGCAACATGCAACAGACACTTTTTTGGAGGACAAAGAACGCAGTTAA 1140 0.414 MSFFSCCTSSEKINKNSFRGSSRDFNHAKSMPSCGTMCFKPDNSKRKFIEQEIAKIGRGNITSQTFSYHELCVATGNFHPENMIGEGGFGRVYKGRIKSINKVVAVKKLNRNGFQGNREFLVEVLILSLLHHPNLVNLVGYCADGEQRILVYEYMVNGSLEDHLLELPEDRKPLDWQTRMNIAAGAAKGLEYLHEVANPPVIYRDFKSSNILLDENFNPKLSDFGLAKLGPTGDKTHVSTRVMGTYGYCAPEYASTGQLTTKSDIYSFGVVFLEMITGRRVLDQSRSSEEQNLVTWAQPLFKDRRKFTSMADPLLKGNYPAKGLHQALAVAAMCLQEEAHTRPLISDVVTAIDVLAKTQMQVGKQQHATDTFLEDKERS* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0266 379 Pfam Protein kinase domain 79 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g0266 379 Gene3D Transferase(Phosphotransferase) domain 1 155 377 - -
Vra6g0266 379 PANTHER RECEPTOR SERINE/THREONINE KINASE 1 376 - -
Vra6g0266 379 ProSitePatterns Serine/Threonine protein kinases active-site signature. 201 213 IPR008271 GO:0004672|GO:0006468
Vra6g0266 379 PANTHER OS07G0668900 PROTEIN 1 376 - -
Vra6g0266 379 SUPERFAMILY Protein kinase-like (PK-like) 63 350 IPR011009 -
Vra6g0266 379 ProSitePatterns Protein kinases ATP-binding region signature. 84 108 IPR017441 GO:0005524
Vra6g0266 379 Gene3D Phosphorylase Kinase; domain 1 63 154 - -
Vra6g0266 379 ProSiteProfiles Protein kinase domain profile. 78 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g0266 379 CDD STKc_IRAK 84 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0266 Vra-Chr6 1974205 1976505 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0266 60 356 Glycoside Hydrolase AT3G07070 70.707 1.46e-159 452
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Vra6g0266 Pkinase 1e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0266 - - gmx:100798032 676.781
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0266 6 1974205 1976505 Vra6g0266 6 1974205 1976505 ECH
Vra10g0039 10 1755593 1757728 Vra6g0266 6 1974205 1976505 PCT