Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0254 ATGCCCGTTACCAACACTTCTCTCACTGTTACCGACTGCTTTTCTGAAATGGTAGAAACAGTAACCGCAAGTTTCAAGCATCTTTGTAATGGTGGTTCTGCAGTTGGGCTATTCATGAAGGCTTTCGAGAGAGTTCTTTTTGCCTTATTTACTTGCATTGTGGCACTTGGAGGGTCAATAGTGGGAACAGTTGCAGGAGGCATAAAAGGGCAGACCACAGAAACTGGTTTTCTTGATGGTGCTGGCAAAGGAGCAATAACAGGAGCCATTGCAGCATTGGAATTGATAAATTTTGACTCTGCTGCTGATGAGCCAGTGTCTAAGTTTGCCCTGTTGAGAAGTTTATTGAATGGGAAAGTCTTTATGGAATGGATATGTCCAGCTGTGGCAAAACTCTATCAGTTGCATGTAACAATTAACACACTGGAAACAATATACCAAGAAGTATCAGACATTTATGATATCAGGGGAGCAAGAGGGGTATCCCAGAATGTGATTATGAAGCTTCAATTTCAGCCATTCAACTCTGGAAAAATGTCCAAGTTATATAACATGTCTTGCTGCTCAGTTTGCTTCCAGGATTTCGAGGATGGAGAATTGGTGAGGATACTTCCAAAATGTGGCCACCTTTTTCACCTAGAATGCATAGACAAGTGGCTAGTCCAACAAGGATCATGTCCAATGTGCAGAACTTATGTTCCAGACCACATTCTTTAA 717 0.4184 MPVTNTSLTVTDCFSEMVETVTASFKHLCNGGSAVGLFMKAFERVLFALFTCIVALGGSIVGTVAGGIKGQTTETGFLDGAGKGAITGAIAALELINFDSAADEPVSKFALLRSLLNGKVFMEWICPAVAKLYQLHVTINTLETIYQEVSDIYDIRGARGVSQNVIMKLQFQPFNSGKMSKLYNMSCCSVCFQDFEDGELVRILPKCGHLFHLECIDKWLVQQGSCPMCRTYVPDHIL* 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0254 238 SMART ring_2 188 229 IPR001841 -
Vra6g0254 238 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 20 233 - -
Vra6g0254 238 SUPERFAMILY RING/U-box 187 234 - -
Vra6g0254 238 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 20 233 IPR044523 -
Vra6g0254 238 Pfam Ring finger domain 188 230 IPR001841 -
Vra6g0254 238 ProSiteProfiles Zinc finger RING-type profile. 188 230 IPR001841 -
Vra6g0254 238 CDD RING-H2_PA-TM-RING 187 230 - -
Vra6g0254 238 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 150 236 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0254 Vra-Chr6 1875359 1877221 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0254 48 233 C3H Transcription Factor Family AT5G66070 38.693 2.44e-37 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0254 - K19041 gmx:100305612 380.948