Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0248 ATGAGCGGAGTGGGGATTGATATTGGAAATGATAATTGTGTGATTGCTGCAGTGAAGCAAGGAGGAGTTGATGTTTTATTGAATGATGAATCCGAACGTGAAACCCCTGCTGTGGTTTGCTTTGGCGAGAAGCAAAGGTTTTTAGGGTCAGCAGGTGCTGCTTCTGCCATGATGCACCCCAAGTCCGCAATATCTCAAGTGAAGAGACTAATAGGCAGGAGATTTGCAGACCCTGATGTTCAAAATGAGTTGAAACTGCTCCCTGTTGAAACCTCGGAAAGTGTAGATGGTGGCATTCTGATACACTTGGAATACTTAAAGGAGAGTCATGCGTTTACCCCGGTTCAAATAGTAGCAATGCTCTTTGCGCACTTGAAGACCATAGCAGAAAAAAAATTTGGGACAACCGTTTCTGACTGTGTTGTTGGGATTCCATCATACTTCACCATCTTGCAGAGACAAGCTTATCTCAACGCAGCAGAAATTGTTGGATTGAAGCCTCTGAGGTTGATCCATGATTGCACTGCAACTGCTCTTAGTTATGGAGTTTACAAAACAGATTTTCCTAGTGAAGCTCCTGTTTATGTTGCATTTGTTGACATAGGCCATTGTGATACTCAGGTCTGTATTGCAGCATTTCAGGCTGGTCAAATGAAGATACTCTCACATGCTTATGATATGAACTTAGGGGGGAGAGACTTTGATGAGGTTCTGTTTAGTCATTTTGCAGCAAAATTTAAAGAACAGTACAACATTGAAGTGTATTCTAATGACAGGGCATGTAGGAGGCTGCACGTGGCATGTGAGAAGTTGAAGAAGATTTTGAGTGCAAATCTAGAGGCTGATCTTAGCGTTGAGTGTTTGATGGATGAAAAAGATGTTAAAGGATACATCAAGAGGGAAGAATTTGAGAATCTGGCATCAGGACTATTGGAGAGAATTTCTGTTCCTTGCAAGAAAGCATTGGCTGATGCAGCCTTGACGGTAGAAAAGATCAGTTCCGTTGAGTTAGTTGGTTCAGGTTCACGGATTCCAGCTATAACTAGAATATTAAGTTCTCTATTTAAGAGAGAGCTCAGCCGCAGACTGAATGCAAGTGAGTGTGTGGCTCGTGGTTGTGCTCTCCAGTGTGCAATGCTGAGTCCTGTTTTCCTTGTCAAAGAATATGAGGTCCGGGATGCTATTCCTTTTTCCATTGGACTTTCATCTGATGGAAAGGCAATTCGTGCAGGATTGCATGGTGGTGTACTCTTCCCAAGAGGCCAACCCATTCCAAGTGTTAAAATTCTCACATTTGAGTACAGTGATTTGCTCCATTTGGAAGCATTCTATGCCAATCCAGATGAATTACCAACCGGGGCATATCCTAAAATTTGTTGCTTCACAATTGGTCCTTTCCATAGATCCCATGCAACTAAGGCAATAATTGAAGTTCAAGTACAACTAAATTTGCATGGCATTATTGGTATTGAATCAGTTACGTTGGTTGAGGATCGTGTGGATGATTCAGGTACAACAGACGATTCTCATTCAAATTCTGAAACAGTCAATATTTCTCCTGTTTCTGAGACAATTGAAAATGCCTCAGATGATAGTATCAATAAAAAGTTTGAAGCTTCTCGTCATTCTGCTGATGGTACAAGAAAAGATAAAGCTAACAGAAGGCTTCATGTACCAGTGAGTGAAAACATTTATGGTGCAATGAACAAGGCCGAGATATTGGAAGCTCAAGAAAAAGAACTCCAGTTAGCCGATCAGGACAGAACTACTGAGCTAATCAAAGACAACAAGAATCAGTTGGAGTCTTATATTTATGAAACAAGGAGTAAGATTTTCAGCACATATCTGAGCTTTTCGAGTGAACATGAGAGGAAGGACGTATCTAGGGGCCTGAAAGAGACCGAGGAATGGCTCTATGATGATGGTGGTGATGAAACTGTAGATGCTTATTCTGCAAAACTAAAAGATCTAAAACAGCTGGTGGATCCAATTGAGTATCGATACAAAGACAGAGAAGCAAGACCACAAGCTACAAGAGACTTGTTAAGCTGCATTGTAGAGTATCGAATGTCAGCAGATTCTCTTCCACCCCAAGATAAAGAACTGGTCATAAATGAGTGCAATAAAGCAGAGCAGTGGCTAAGAGAAATGAGGCAGCAACAAGATCTTTACCCTAAAAACTCTGATCCAGTATTAATATCAATTGATATCAAGAACAAGACAGAGGAATTAAACTCAGTATGCCAAAAGGTATTGAAATCCAACGGTTCTCCAATTCCAAGAGATGAGGGTACAGACAAACAAAATACCTCATGA 2316 0.4102 MSGVGIDIGNDNCVIAAVKQGGVDVLLNDESERETPAVVCFGEKQRFLGSAGAASAMMHPKSAISQVKRLIGRRFADPDVQNELKLLPVETSESVDGGILIHLEYLKESHAFTPVQIVAMLFAHLKTIAEKKFGTTVSDCVVGIPSYFTILQRQAYLNAAEIVGLKPLRLIHDCTATALSYGVYKTDFPSEAPVYVAFVDIGHCDTQVCIAAFQAGQMKILSHAYDMNLGGRDFDEVLFSHFAAKFKEQYNIEVYSNDRACRRLHVACEKLKKILSANLEADLSVECLMDEKDVKGYIKREEFENLASGLLERISVPCKKALADAALTVEKISSVELVGSGSRIPAITRILSSLFKRELSRRLNASECVARGCALQCAMLSPVFLVKEYEVRDAIPFSIGLSSDGKAIRAGLHGGVLFPRGQPIPSVKILTFEYSDLLHLEAFYANPDELPTGAYPKICCFTIGPFHRSHATKAIIEVQVQLNLHGIIGIESVTLVEDRVDDSGTTDDSHSNSETVNISPVSETIENASDDSINKKFEASRHSADGTRKDKANRRLHVPVSENIYGAMNKAEILEAQEKELQLADQDRTTELIKDNKNQLESYIYETRSKIFSTYLSFSSEHERKDVSRGLKETEEWLYDDGGDETVDAYSAKLKDLKQLVDPIEYRYKDREARPQATRDLLSCIVEYRMSADSLPPQDKELVINECNKAEQWLREMRQQQDLYPKNSDPVLISIDIKNKTEELNSVCQKVLKSNGSPIPRDEGTDKQNTS* 772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0248 771 PANTHER HEAT SHOCK 70 KDA PROTEIN 1 771 - -
Vra6g0248 771 Pfam Hsp70 protein 4 668 IPR013126 GO:0005524|GO:0140662
Vra6g0248 771 Gene3D - 568 681 IPR029048 -
Vra6g0248 771 CDD HSPA4_like_NDB 2 381 - -
Vra6g0248 771 Gene3D - 38 113 - -
Vra6g0248 771 MobiDBLite consensus disorder prediction 751 771 - -
Vra6g0248 771 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 387 536 IPR029047 -
Vra6g0248 771 Gene3D - 5 374 - -
Vra6g0248 771 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 569 667 IPR029048 -
Vra6g0248 771 MobiDBLite consensus disorder prediction 509 528 - -
Vra6g0248 771 Gene3D Actin; Chain A, domain 4 230 313 - -
Vra6g0248 771 MobiDBLite consensus disorder prediction 529 553 - -
Vra6g0248 771 MobiDBLite consensus disorder prediction 500 553 - -
Vra6g0248 771 PRINTS 70kDa heat shock protein signature 2 15 - -
Vra6g0248 771 PRINTS 70kDa heat shock protein signature 30 42 - -
Vra6g0248 771 PRINTS 70kDa heat shock protein signature 140 160 - -
Vra6g0248 771 PRINTS 70kDa heat shock protein signature 332 348 - -
Vra6g0248 771 PRINTS 70kDa heat shock protein signature 363 383 - -
Vra6g0248 771 PRINTS 70kDa heat shock protein signature 388 407 - -
Vra6g0248 771 PRINTS 70kDa heat shock protein signature 473 489 - -
Vra6g0248 771 Gene3D - 186 360 - -
Vra6g0248 771 PANTHER HSC70CB, ISOFORM G-RELATED 1 771 - -
Vra6g0248 771 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 386 601 IPR029047 -
Vra6g0248 771 SUPERFAMILY Actin-like ATPase domain 3 185 IPR043129 -
Vra6g0248 771 SUPERFAMILY Actin-like ATPase domain 195 380 IPR043129 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0248 Vra-Chr6 1840050 1845876 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0248 4 436 Calmodulin-binding Proteins AT1G16030 32.723 4.06e-73 249
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0248 K09489 - gmx:100795914 1270.76