Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0246 ATGAGAAGACCAAAATCGAAGGAGTTTCGGAAGCAACAGAGAGTCTCAGAGCAGGAAGAGATAAACCTGTTGAATTCATGGATCCAGTTTCAGCCACCGGACTCCGGCTCCAACCCAATGTCGCTTCCGCCACTGCCCAAAACCTCCCCCGTTGGCCTCCTCGAAGGCAACACCTACTCGCGCTACGCTGGCGCGTCCCGCTTTGATCAATTCCCGCTTTCCAGGAAAACAAAGGACGCCCTACGGGAAGCCAAGTTCGTTGTCACAACCGACATCCAGAGGGCTGCTCTCCCCCACGCGCTCTGTGGCCGGGACATCCTCGGCGCCGCCAAAACTGGGTCCGGTAAAACCCTCACTTTCATTATCCCTGTGTTGGAGAAGCTGTATAGAGAGAGGTGGGGACCTGAAGATGGCGTTGGCAGCATCATCATATCGCCTACAAGGGAATTGGCTGGTCAGATATTTGATGTGTTAAAGGATGTTGGAAAACACCATAACTTTAGTGCTGGCCTTCTCATTGGTGGTCGAAAGGATGTTGACATGGAGAAAGAACGTGTTAATGAGCTCAATATATTGATCTGCACACCTGGTAGACTGCTACAACACATGGATGAAACTCCCAATTTTGATTGTTCACAAATGCAGATTTTGGTGCTAGACGAGGCTGATCGCATTCTAGACAGTGGGTTCAAAAAGGAACTAAATGCAATCATTTCTCAACTACCAAAGCGTAGACAAACCTTGCTTTTCTCTGCAACTCAAACAAAGTCAATTCAAGATCTTGCCAGACTAAGTTTGAAGGATCCAGAGTATCTGAGTGTTCATGAAGAATCAGTGACAGCCACTCCTTCTCTGTTGAAGCAAATTGTGATGATTGTTCCCCTTGAACAAAAGTTAGATATGCTGTGGAGTTTCATAAAATCTCATCTACAGTCAAAAATACTTGTCTTTCTTTCAAGTTGTAAACAGGTAAAATTTGTCTTTGAAGCATTTAAGAAACTGCACCCTGGCATTCCATTGAAGTGCCTTCATGGGAGGATGAAACAGGAAAGAAGAATGGCAATATATTCTGAGTTTTGTGAGAAGCGCTCAGTTCTCTTCTCAACTGATGTGGCCGCAAGAGGCCTTGATTTTAATAAGGCAGTTGACTGGGTTGTTCAGGTTGATTGCCCCGAAAATGTAGCTTCTTACATACATAGAGTTGGTCGCACAGCTCGATATAAATCTGGTGGAAAGTCAGTTTTATTTTTGTTGCCTTCTGAAATGCAAATGCTTGAAAAGTTAAAAGCAGCAAAGGTTCCAGTGCATTTTACGAAGCCAAGGCAAGAACGATTACAACCAGTTTCTTCTCTATTGGCGTCTTTACTGGTTAAATATCCAGACCTGCAGCATCGGGCTCAGAGGGCGTTCATCACATATTTGAGATCCATCCATATACAAAAGGATAAAGACATATTTGATGTTATGAAATTGCCTATTAACGAGTATTCGGCGTCATTAGGTTTACCAATGACTCCAAAAATCCGTTTTCTTAACCAAAAAATTAAATCTAAAGCTGTGTCAACAAAATCAGTTTTAGTTGAACCAGAAGATTCAAGTGAGAAAAATGTCTTGGAGGTTTCTAGAAACATAGATACAGATCCTTTCAAGGATGAAGAAATCGAAAATGATCTTTTTCAGTTAGCAGATTCTGCAAATGAAGACAAAGTGAAGTCATCTGAAATTGAAGAAATAATACCAGCAACTCGTGTATTGAAGAAAAAGAAGCTAAAGATTAATGTACATAGGCCAGTGGGGACCAGGGTTGTCTTTGATGATGAAGGTAACACACTTCCTCCGCTAGCCAGGATAGCTGACACACAAAGTGGCAAAGAAGCGTTGCTGCTTGACCCAGAACAAAAAGCTGAATACTATAGAAGGATGCGCGATGATTTGAAGAAGGCTGACAAGGAAGACAAGCTTATAGAGCGTCAGCGGCTTAGAGAAAAAAGAATAAAGCAGAAGATGAAATGGAAAGCTGGGAATGAGGAAGAGGAGGACCAAGATGATAATTCTGGGTCAGAAAGAGACGAAACTGTTAATAGACGGCATAAAAAGAATAAAGTATACTTTGACAGTGACAGTGAGGAGGGTGAAAGAAATGAAATCTCAGGGAATGCACGTACAAGTTCGGGTGCGGTTACTTTGGAGGAGCAAGAAGCTCTGGCTTTGAAATTGTTAAATTCTATGCACTCATAG 2238 0.4267 MRRPKSKEFRKQQRVSEQEEINLLNSWIQFQPPDSGSNPMSLPPLPKTSPVGLLEGNTYSRYAGASRFDQFPLSRKTKDALREAKFVVTTDIQRAALPHALCGRDILGAAKTGSGKTLTFIIPVLEKLYRERWGPEDGVGSIIISPTRELAGQIFDVLKDVGKHHNFSAGLLIGGRKDVDMEKERVNELNILICTPGRLLQHMDETPNFDCSQMQILVLDEADRILDSGFKKELNAIISQLPKRRQTLLFSATQTKSIQDLARLSLKDPEYLSVHEESVTATPSLLKQIVMIVPLEQKLDMLWSFIKSHLQSKILVFLSSCKQVKFVFEAFKKLHPGIPLKCLHGRMKQERRMAIYSEFCEKRSVLFSTDVAARGLDFNKAVDWVVQVDCPENVASYIHRVGRTARYKSGGKSVLFLLPSEMQMLEKLKAAKVPVHFTKPRQERLQPVSSLLASLLVKYPDLQHRAQRAFITYLRSIHIQKDKDIFDVMKLPINEYSASLGLPMTPKIRFLNQKIKSKAVSTKSVLVEPEDSSEKNVLEVSRNIDTDPFKDEEIENDLFQLADSANEDKVKSSEIEEIIPATRVLKKKKLKINVHRPVGTRVVFDDEGNTLPPLARIADTQSGKEALLLDPEQKAEYYRRMRDDLKKADKEDKLIERQRLREKRIKQKMKWKAGNEEEEDQDDNSGSERDETVNRRHKKNKVYFDSDSEEGERNEISGNARTSSGAVTLEEQEALALKLLNSMHS* 746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0246 745 MobiDBLite consensus disorder prediction 666 728 - -
Vra6g0246 745 Pfam DEAD/DEAH box helicase 90 260 IPR011545 GO:0003676|GO:0005524
Vra6g0246 745 SMART helicmild6 325 408 IPR001650 -
Vra6g0246 745 CDD DEADc_DDX10 77 275 - -
Vra6g0246 745 PANTHER RNA HELICASE 57 540 - -
Vra6g0246 745 SMART DUF4217_3 447 510 IPR025313 -
Vra6g0246 745 Gene3D - 284 528 IPR027417 -
Vra6g0246 745 Pfam Helicase conserved C-terminal domain 298 407 IPR001650 -
Vra6g0246 745 Gene3D - 55 278 IPR027417 -
Vra6g0246 745 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 66 94 IPR014014 GO:0003724
Vra6g0246 745 PANTHER ATP-DEPENDENT RNA HELICASE DDX10-RELATED 57 540 - -
Vra6g0246 745 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 138 427 IPR027417 -
Vra6g0246 745 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 218 226 IPR000629 -
Vra6g0246 745 CDD SF2_C_DEAD 286 417 - -
Vra6g0246 745 SMART ultradead3 85 289 IPR014001 -
Vra6g0246 745 MobiDBLite consensus disorder prediction 687 716 - -
Vra6g0246 745 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 97 272 IPR014001 -
Vra6g0246 745 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 294 456 IPR001650 -
Vra6g0246 745 Pfam Domain of unknown function (DUF4217) 451 508 IPR025313 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0246 Vra-Chr6 1818773 1823155 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0246 93 429 Eukaryotic Initiation Factors Gene Family AT3G19760 29.825 9.33e-37 141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0246 K14776 - gmx:100792106 1332.39