Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0243 ATGGTTGAAGTGGGTATTTTTCAGATCACAAGTAACAGTTTCGACCCATTTGCTGAGGCTAAAGATAGAGATGCCCCCGGGGCGAAGGAGTATGTGCATATTCGTATACAGCAGAGGAATGGGAAGAAGAGTTTGACGACAGTGCAAGGTCTGAGGAAAGAGTTCAGCTATGAGAAGATTCTGAAAGACCTGAAGAAAGAGTTCTGCTGCAATGGCAATGTTGTGCATGACAAGGAGCTTGGCAAGATTATCCAACTCCAAGGTGATCAGCGCAAAAACGTTTCTCACTTCCTCATTCAGGCTGCACTTGTTAGGAAGGACCAGATCAAGATTCATGGATTTTGA 345 0.4464 MVEVGIFQITSNSFDPFAEAKDRDAPGAKEYVHIRIQQRNGKKSLTTVQGLRKEFSYEKILKDLKKEFCCNGNVVHDKELGKIIQLQGDQRKNVSHFLIQAALVRKDQIKIHGF* 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0243 114 CDD eIF1_SUI1 30 113 IPR005874 GO:0003743
Vra6g0243 114 TIGRFAM SUI1_MOF2: translation initiation factor SUI1 12 114 IPR005874 GO:0003743
Vra6g0243 114 SUPERFAMILY eIF1-like 9 114 IPR036877 GO:0003743|GO:0006413
Vra6g0243 114 PIRSF Transl_init_SUI1_Euk 3 114 IPR005874 GO:0003743
Vra6g0243 114 Gene3D - 5 114 - -
Vra6g0243 114 ProSiteProfiles Translation initiation factor SUI1 family profile. 32 102 IPR001950 GO:0003743|GO:0006413
Vra6g0243 114 PANTHER PROTEIN TRANSLATION FACTOR SUI1 HOMOLOG 1 114 - -
Vra6g0243 114 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 1 114 - -
Vra6g0243 114 Pfam Translation initiation factor SUI1 29 101 IPR001950 GO:0003743|GO:0006413
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0243 Vra-Chr6 1812615 1813351 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0243 1 114 Eukaryotic Initiation Factors Gene Family AT5G54940 79.825 7.08e-63 185
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0243 K03113 - gmx:100499676 214.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0243 6 1812615 1813351 Vra6g0243 6 1812615 1813351 ECH
Vra6g0243 6 1812615 1813351 Vra6g0243 6 1812615 1813351 PCT